miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24427 5' -53.8 NC_005264.1 + 68251 0.66 0.974274
Target:  5'- -----aUGCCCGCGCCgcgggcggccugcugCUGcCGCCUc -3'
miRNA:   3'- ccuuuaAUGGGCGUGGa--------------GGCaGCGGA- -5'
24427 5' -53.8 NC_005264.1 + 128710 0.66 0.97401
Target:  5'- gGGGAGgcggGCUCGCGCCU-CGaCGCUg -3'
miRNA:   3'- -CCUUUaa--UGGGCGUGGAgGCaGCGGa -5'
24427 5' -53.8 NC_005264.1 + 135008 0.66 0.97401
Target:  5'- uGGAGAcgGagUCUGCcCCUCCGUCGgCa -3'
miRNA:   3'- -CCUUUaaU--GGGCGuGGAGGCAGCgGa -5'
24427 5' -53.8 NC_005264.1 + 43903 0.66 0.971262
Target:  5'- cGGAGAcgAUa-GCGCggCCGUCGCCUc -3'
miRNA:   3'- -CCUUUaaUGggCGUGgaGGCAGCGGA- -5'
24427 5' -53.8 NC_005264.1 + 135962 0.66 0.971262
Target:  5'- -cGAAUUACUCGCACUgCCGcucuuuUCGUCUa -3'
miRNA:   3'- ccUUUAAUGGGCGUGGaGGC------AGCGGA- -5'
24427 5' -53.8 NC_005264.1 + 157150 0.66 0.971262
Target:  5'- aGgcGUUGCCCGCGCgCUCUGuacUCGUg- -3'
miRNA:   3'- cCuuUAAUGGGCGUG-GAGGC---AGCGga -5'
24427 5' -53.8 NC_005264.1 + 61442 0.66 0.971262
Target:  5'- ------gGCCCGCuCCUCgG-CGCCg -3'
miRNA:   3'- ccuuuaaUGGGCGuGGAGgCaGCGGa -5'
24427 5' -53.8 NC_005264.1 + 129184 0.66 0.971262
Target:  5'- --cGGUUACCUgggucggcuaGCACCgucgaccaaCCGUCGCCg -3'
miRNA:   3'- ccuUUAAUGGG----------CGUGGa--------GGCAGCGGa -5'
24427 5' -53.8 NC_005264.1 + 38123 0.66 0.971262
Target:  5'- aGgcGUUGCCCGCGCgCUCUGuacUCGUg- -3'
miRNA:   3'- cCuuUAAUGGGCGUG-GAGGC---AGCGga -5'
24427 5' -53.8 NC_005264.1 + 110556 0.66 0.970689
Target:  5'- uGGAGGUcGCgCGUACCgcauuguagaugCCGUgGCCg -3'
miRNA:   3'- -CCUUUAaUGgGCGUGGa-----------GGCAgCGGa -5'
24427 5' -53.8 NC_005264.1 + 23782 0.66 0.968312
Target:  5'- aGGA----ACCgGCGCCUCCGcgaGCUg -3'
miRNA:   3'- -CCUuuaaUGGgCGUGGAGGCag-CGGa -5'
24427 5' -53.8 NC_005264.1 + 41004 0.66 0.968312
Target:  5'- ---uGUUcCCCGCGCUUuuGuUCGCCg -3'
miRNA:   3'- ccuuUAAuGGGCGUGGAggC-AGCGGa -5'
24427 5' -53.8 NC_005264.1 + 52026 0.66 0.968312
Target:  5'- gGGAAAUaACCC-CGCCgUCG-CGCCg -3'
miRNA:   3'- -CCUUUAaUGGGcGUGGaGGCaGCGGa -5'
24427 5' -53.8 NC_005264.1 + 64875 0.66 0.966442
Target:  5'- gGGAGAUUGCCCGCaaggcggcggagaugACCU-CGaCGCg- -3'
miRNA:   3'- -CCUUUAAUGGGCG---------------UGGAgGCaGCGga -5'
24427 5' -53.8 NC_005264.1 + 159173 0.66 0.965153
Target:  5'- -------cCCCGCACCaaugCCaGUCGCCc -3'
miRNA:   3'- ccuuuaauGGGCGUGGa---GG-CAGCGGa -5'
24427 5' -53.8 NC_005264.1 + 60715 0.66 0.965153
Target:  5'- aGGuuGUUGgCCGCgGCCUcguaCCGcCGCCa -3'
miRNA:   3'- -CCuuUAAUgGGCG-UGGA----GGCaGCGGa -5'
24427 5' -53.8 NC_005264.1 + 87875 0.66 0.965153
Target:  5'- -uGAAUUACCCGCAguacgacgccacCCUC-GUCGCg- -3'
miRNA:   3'- ccUUUAAUGGGCGU------------GGAGgCAGCGga -5'
24427 5' -53.8 NC_005264.1 + 157911 0.66 0.963154
Target:  5'- cGAcAGUUGCCuuccuccuccucguuCGCAUCUUCGUCGCUc -3'
miRNA:   3'- cCU-UUAAUGG---------------GCGUGGAGGCAGCGGa -5'
24427 5' -53.8 NC_005264.1 + 14989 0.66 0.961779
Target:  5'- uGGguAUU-CCCGCauACCgugCCGgCGCCUa -3'
miRNA:   3'- -CCuuUAAuGGGCG--UGGa--GGCaGCGGA- -5'
24427 5' -53.8 NC_005264.1 + 105906 0.66 0.961779
Target:  5'- ------aACCCGuCGCC-CCGUgCGCCa -3'
miRNA:   3'- ccuuuaaUGGGC-GUGGaGGCA-GCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.