Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24428 | 3' | -55.3 | NC_005264.1 | + | 96411 | 1.1 | 0.002897 |
Target: 5'- uCCUCAAGGCAGAACGGAGUCUGGCCAa -3' miRNA: 3'- -GGAGUUCCGUCUUGCCUCAGACCGGU- -5' |
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24428 | 3' | -55.3 | NC_005264.1 | + | 74281 | 0.75 | 0.502861 |
Target: 5'- gCCUCAuauGGCAGcauuAGCGGcGGUCUGGCg- -3' miRNA: 3'- -GGAGUu--CCGUC----UUGCC-UCAGACCGgu -5' |
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24428 | 3' | -55.3 | NC_005264.1 | + | 99387 | 0.71 | 0.724568 |
Target: 5'- uCCgCAAcGGCGGAGCGGGGUau-GCCAg -3' miRNA: 3'- -GGaGUU-CCGUCUUGCCUCAgacCGGU- -5' |
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24428 | 3' | -55.3 | NC_005264.1 | + | 91411 | 0.69 | 0.791296 |
Target: 5'- cCCUagcgcCGGGGCAccgGCGGAGUCUGuGUCAu -3' miRNA: 3'- -GGA-----GUUCCGUcu-UGCCUCAGAC-CGGU- -5' |
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24428 | 3' | -55.3 | NC_005264.1 | + | 139501 | 0.69 | 0.809204 |
Target: 5'- gCCUCGGGGCAGAccccg--CUGGCCGc -3' miRNA: 3'- -GGAGUUCCGUCUugccucaGACCGGU- -5' |
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24428 | 3' | -55.3 | NC_005264.1 | + | 57562 | 0.69 | 0.817921 |
Target: 5'- cCC-CAAGGUuuucgcAGAGCGGuuUCaUGGCCAu -3' miRNA: 3'- -GGaGUUCCG------UCUUGCCucAG-ACCGGU- -5' |
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24428 | 3' | -55.3 | NC_005264.1 | + | 39090 | 0.69 | 0.817921 |
Target: 5'- gCUCGgcGGGCA--GCGGcGUCUGGaCCAg -3' miRNA: 3'- gGAGU--UCCGUcuUGCCuCAGACC-GGU- -5' |
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24428 | 3' | -55.3 | NC_005264.1 | + | 158117 | 0.69 | 0.817921 |
Target: 5'- gCUCGgcGGGCA--GCGGcGUCUGGaCCAg -3' miRNA: 3'- gGAGU--UCCGUcuUGCCuCAGACC-GGU- -5' |
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24428 | 3' | -55.3 | NC_005264.1 | + | 5950 | 0.68 | 0.840591 |
Target: 5'- cCCUCGcgcaGGGCagcggcgcauucgcGGAugGGAGaCUgGGCCAa -3' miRNA: 3'- -GGAGU----UCCG--------------UCUugCCUCaGA-CCGGU- -5' |
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24428 | 3' | -55.3 | NC_005264.1 | + | 136570 | 0.68 | 0.843027 |
Target: 5'- uCCUCGGuGGCgucgaAGAGCGG-GUCguagagagGGCCGa -3' miRNA: 3'- -GGAGUU-CCG-----UCUUGCCuCAGa-------CCGGU- -5' |
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24428 | 3' | -55.3 | NC_005264.1 | + | 91879 | 0.68 | 0.851021 |
Target: 5'- -gUCGAGGUA--GCGGGGUggUUGGCCGc -3' miRNA: 3'- ggAGUUCCGUcuUGCCUCA--GACCGGU- -5' |
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24428 | 3' | -55.3 | NC_005264.1 | + | 142163 | 0.68 | 0.873788 |
Target: 5'- gUUCAGGGUuGGACGGAGUCgaguccGaGCCc -3' miRNA: 3'- gGAGUUCCGuCUUGCCUCAGa-----C-CGGu -5' |
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24428 | 3' | -55.3 | NC_005264.1 | + | 124976 | 0.67 | 0.878825 |
Target: 5'- cCCUCGcgcaGGGCagcggcgcauucgcGGAugGGAGaCgugGGCCAa -3' miRNA: 3'- -GGAGU----UCCG--------------UCUugCCUCaGa--CCGGU- -5' |
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24428 | 3' | -55.3 | NC_005264.1 | + | 121648 | 0.67 | 0.880951 |
Target: 5'- gCCgagC-AGGCGGGGCGGAGUCUucuGUCu -3' miRNA: 3'- -GGa--GuUCCGUCUUGCCUCAGAc--CGGu -5' |
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24428 | 3' | -55.3 | NC_005264.1 | + | 2621 | 0.67 | 0.880951 |
Target: 5'- gCCgagC-AGGCGGGGCGGAGUCUucuGUCu -3' miRNA: 3'- -GGa--GuUCCGUCUUGCCUCAGAc--CGGu -5' |
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24428 | 3' | -55.3 | NC_005264.1 | + | 27614 | 0.67 | 0.912182 |
Target: 5'- uUUCGAGGUAGAuggcuagGCGGcuGGUCgcgcgaacucguuUGGCCAc -3' miRNA: 3'- gGAGUUCCGUCU-------UGCC--UCAG-------------ACCGGU- -5' |
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24428 | 3' | -55.3 | NC_005264.1 | + | 43993 | 0.67 | 0.913366 |
Target: 5'- aCgCGAGGCGGAcuuggGCaGGGUCgaggugGGCCAu -3' miRNA: 3'- gGaGUUCCGUCU-----UGcCUCAGa-----CCGGU- -5' |
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24428 | 3' | -55.3 | NC_005264.1 | + | 31517 | 0.66 | 0.919147 |
Target: 5'- gCUCcAGGCucGGGCGGGGag-GGCCGu -3' miRNA: 3'- gGAGuUCCGu-CUUGCCUCagaCCGGU- -5' |
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24428 | 3' | -55.3 | NC_005264.1 | + | 111390 | 0.66 | 0.919147 |
Target: 5'- aCUUCAGGGUgcucaucucugAGGACGGAGgg-GGCg- -3' miRNA: 3'- -GGAGUUCCG-----------UCUUGCCUCagaCCGgu -5' |
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24428 | 3' | -55.3 | NC_005264.1 | + | 150544 | 0.66 | 0.919147 |
Target: 5'- gCUCcAGGCucGGGCGGGGag-GGCCGu -3' miRNA: 3'- gGAGuUCCGu-CUUGCCUCagaCCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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