miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24428 5' -50.9 NC_005264.1 + 53990 0.66 0.992527
Target:  5'- cGGCGGCGAGACUgGAUAGGguaaucCCa-- -3'
miRNA:   3'- -UCGUCGUUCUGGaCUAUCUac----GGaac -5'
24428 5' -50.9 NC_005264.1 + 89960 0.66 0.992527
Target:  5'- aAGCAgGCAAG-CCguGUGGAaGCCUUGc -3'
miRNA:   3'- -UCGU-CGUUCuGGacUAUCUaCGGAAC- -5'
24428 5' -50.9 NC_005264.1 + 48499 0.66 0.991394
Target:  5'- cGCGGCAAGG-CUGAc-GAUGUCUUc -3'
miRNA:   3'- uCGUCGUUCUgGACUauCUACGGAAc -5'
24428 5' -50.9 NC_005264.1 + 137831 0.66 0.991394
Target:  5'- uGCAGUAAcGugCUGGUGGAaagcGCCa-- -3'
miRNA:   3'- uCGUCGUU-CugGACUAUCUa---CGGaac -5'
24428 5' -50.9 NC_005264.1 + 79559 0.66 0.98545
Target:  5'- cGCGGCAAGGCCUu---GcgGCCg-- -3'
miRNA:   3'- uCGUCGUUCUGGAcuauCuaCGGaac -5'
24428 5' -50.9 NC_005264.1 + 104104 0.67 0.981495
Target:  5'- cGCAGCGGcGGCCgc--GGAUGCCcUGa -3'
miRNA:   3'- uCGUCGUU-CUGGacuaUCUACGGaAC- -5'
24428 5' -50.9 NC_005264.1 + 146413 0.67 0.97924
Target:  5'- cGUagGGCGGGugCUGAUGgcucGAUGCCg-- -3'
miRNA:   3'- uCG--UCGUUCugGACUAU----CUACGGaac -5'
24428 5' -50.9 NC_005264.1 + 157416 0.69 0.939703
Target:  5'- gAGCGGCGAcGCCgaGAcAGAUGCCg-- -3'
miRNA:   3'- -UCGUCGUUcUGGa-CUaUCUACGGaac -5'
24428 5' -50.9 NC_005264.1 + 38389 0.69 0.939703
Target:  5'- gAGCGGCGAcGCCgaGAcAGAUGCCg-- -3'
miRNA:   3'- -UCGUCGUUcUGGa-CUaUCUACGGaac -5'
24428 5' -50.9 NC_005264.1 + 101748 0.69 0.939703
Target:  5'- uGGCGGCGcgcuccccaaaGGACgUGGUGGcgGCCcUGa -3'
miRNA:   3'- -UCGUCGU-----------UCUGgACUAUCuaCGGaAC- -5'
24428 5' -50.9 NC_005264.1 + 113695 0.69 0.934618
Target:  5'- gGGguGCAAGGCUUGGgcagAGgcGCCUc- -3'
miRNA:   3'- -UCguCGUUCUGGACUa---UCuaCGGAac -5'
24428 5' -50.9 NC_005264.1 + 77772 0.7 0.905232
Target:  5'- uGCGGC-GGACCUGGggaacGGGgcagGCCUUGu -3'
miRNA:   3'- uCGUCGuUCUGGACUa----UCUa---CGGAAC- -5'
24428 5' -50.9 NC_005264.1 + 6683 0.71 0.884481
Target:  5'- cAGCAGCGAGGCCgaGAcGGccGCCUc- -3'
miRNA:   3'- -UCGUCGUUCUGGa-CUaUCuaCGGAac -5'
24428 5' -50.9 NC_005264.1 + 125710 0.71 0.884481
Target:  5'- cAGCAGCGAGGCCgaGAcGGccGCCUc- -3'
miRNA:   3'- -UCGUCGUUCUGGa-CUaUCuaCGGAac -5'
24428 5' -50.9 NC_005264.1 + 97247 0.71 0.877064
Target:  5'- cAGCAGCAAGAUgUGGccgccggGCCUUGg -3'
miRNA:   3'- -UCGUCGUUCUGgACUaucua--CGGAAC- -5'
24428 5' -50.9 NC_005264.1 + 96449 1.1 0.00656
Target:  5'- cAGCAGCAAGACCUGAUAGAUGCCUUGg -3'
miRNA:   3'- -UCGUCGUUCUGGACUAUCUACGGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.