miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24429 3' -50.3 NC_005264.1 + 148561 0.66 0.995077
Target:  5'- aGAGCCCAu-GCCuuauUUGUGGGAcacuagagACGCg -3'
miRNA:   3'- -CUUGGGUuuCGGc---AGCACCUUa-------UGCG- -5'
24429 3' -50.3 NC_005264.1 + 47515 0.67 0.994278
Target:  5'- aGAGCCCGAcuaggguuauauAGCuCGUCa-GGAAgggcUGCGCg -3'
miRNA:   3'- -CUUGGGUU------------UCG-GCAGcaCCUU----AUGCG- -5'
24429 3' -50.3 NC_005264.1 + 111209 0.67 0.99402
Target:  5'- -cACCuCAGcuCCGUCGUGGAGUucaaggaguuagucACGUc -3'
miRNA:   3'- cuUGG-GUUucGGCAGCACCUUA--------------UGCG- -5'
24429 3' -50.3 NC_005264.1 + 154878 0.67 0.992043
Target:  5'- cGGACCUcuaggcagcgacaaAGAcGCCGcggcCGUGGAcgACGCg -3'
miRNA:   3'- -CUUGGG--------------UUU-CGGCa---GCACCUuaUGCG- -5'
24429 3' -50.3 NC_005264.1 + 131703 0.67 0.989984
Target:  5'- aGAACCgCAcGGGuCCGUCGcGGAccACGCc -3'
miRNA:   3'- -CUUGG-GU-UUC-GGCAGCaCCUuaUGCG- -5'
24429 3' -50.3 NC_005264.1 + 12676 0.67 0.989984
Target:  5'- aGAACCgCAcGGGuCCGUCGcGGAccACGCc -3'
miRNA:   3'- -CUUGG-GU-UUC-GGCAGCaCCUuaUGCG- -5'
24429 3' -50.3 NC_005264.1 + 143667 0.68 0.98859
Target:  5'- --cCCCGGAGCCaucauccugGUUGUGauGUGCGCg -3'
miRNA:   3'- cuuGGGUUUCGG---------CAGCACcuUAUGCG- -5'
24429 3' -50.3 NC_005264.1 + 53354 0.68 0.986889
Target:  5'- cAGCCUAAGGaCGgCGUGGcaagcguGAUGCGCg -3'
miRNA:   3'- cUUGGGUUUCgGCaGCACC-------UUAUGCG- -5'
24429 3' -50.3 NC_005264.1 + 14901 0.68 0.983498
Target:  5'- cGACCCuucGCCgGUCGUGuacAUGCGCu -3'
miRNA:   3'- cUUGGGuuuCGG-CAGCACcu-UAUGCG- -5'
24429 3' -50.3 NC_005264.1 + 51464 0.68 0.981467
Target:  5'- -cACCCu--GaaGUCGUGGGAcACGCc -3'
miRNA:   3'- cuUGGGuuuCggCAGCACCUUaUGCG- -5'
24429 3' -50.3 NC_005264.1 + 130903 0.68 0.981039
Target:  5'- cGAGCUCAGAGCCGagccgcgagggcCGUGGGAaaAUGCc -3'
miRNA:   3'- -CUUGGGUUUCGGCa-----------GCACCUUa-UGCG- -5'
24429 3' -50.3 NC_005264.1 + 11877 0.68 0.981039
Target:  5'- cGAGCUCAGAGCCGagccgcgagggcCGUGGGAaaAUGCc -3'
miRNA:   3'- -CUUGGGUUUCGGCa-----------GCACCUUa-UGCG- -5'
24429 3' -50.3 NC_005264.1 + 58012 0.69 0.979253
Target:  5'- cGGCCCcggcggacAGGCCGUCGUGcg--GCGCc -3'
miRNA:   3'- cUUGGGu-------UUCGGCAGCACcuuaUGCG- -5'
24429 3' -50.3 NC_005264.1 + 98431 0.69 0.976849
Target:  5'- cGGACUaucuGAGCCaGUCGUGGAGcucgGCGg -3'
miRNA:   3'- -CUUGGgu--UUCGG-CAGCACCUUa---UGCg -5'
24429 3' -50.3 NC_005264.1 + 139807 0.69 0.976849
Target:  5'- cGugCCGucGGCCGUCGcGGGAcgaaACGCg -3'
miRNA:   3'- cUugGGUu-UCGGCAGCaCCUUa---UGCG- -5'
24429 3' -50.3 NC_005264.1 + 90973 0.69 0.976849
Target:  5'- -cGCCCGcguGCCGUCGcGGAAcacCGCc -3'
miRNA:   3'- cuUGGGUuu-CGGCAGCaCCUUau-GCG- -5'
24429 3' -50.3 NC_005264.1 + 155186 0.69 0.974247
Target:  5'- cGAGCCCuccGAGCCGgcaggcggcguuUCGUGGu-UGgGCg -3'
miRNA:   3'- -CUUGGGu--UUCGGC------------AGCACCuuAUgCG- -5'
24429 3' -50.3 NC_005264.1 + 36159 0.69 0.974247
Target:  5'- cGAGCCCuccGAGCCGgcaggcggcguuUCGUGGu-UGgGCg -3'
miRNA:   3'- -CUUGGGu--UUCGGC------------AGCACCuuAUgCG- -5'
24429 3' -50.3 NC_005264.1 + 100616 0.69 0.971438
Target:  5'- cGAcCCCGAAGCgGcCGcGGAGcGCGCc -3'
miRNA:   3'- -CUuGGGUUUCGgCaGCaCCUUaUGCG- -5'
24429 3' -50.3 NC_005264.1 + 108922 0.69 0.971438
Target:  5'- gGAACCC-GAGCCG-CGUGGcuuucaGCa -3'
miRNA:   3'- -CUUGGGuUUCGGCaGCACCuuaug-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.