miRNA display CGI


Results 21 - 40 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24429 5' -62.9 NC_005264.1 + 48372 0.66 0.61178
Target:  5'- -uGCGCAGUGccGCGuCGaGGCGCUcgACGUu -3'
miRNA:   3'- ccCGCGUCGCu-CGC-GC-CCGCGA--UGCA- -5'
24429 5' -62.9 NC_005264.1 + 1629 0.66 0.61178
Target:  5'- uGGGCGCGGCuccaaccuGCcaucucuuucCGGGCGUUACGc -3'
miRNA:   3'- -CCCGCGUCGcu------CGc---------GCCCGCGAUGCa -5'
24429 5' -62.9 NC_005264.1 + 123482 0.66 0.602068
Target:  5'- cGGGCauGCGGUGGccGCGCGGuuGCUggGCGa -3'
miRNA:   3'- -CCCG--CGUCGCU--CGCGCCcgCGA--UGCa -5'
24429 5' -62.9 NC_005264.1 + 19371 0.66 0.602068
Target:  5'- cGGCGUcagguaAGCGuGCGUuugGGGCGCauugGCGa -3'
miRNA:   3'- cCCGCG------UCGCuCGCG---CCCGCGa---UGCa -5'
24429 5' -62.9 NC_005264.1 + 66508 0.66 0.59625
Target:  5'- uGGCGCgguacAGCGAGCGUGcccugacgacgaccGCGUUGCGg -3'
miRNA:   3'- cCCGCG-----UCGCUCGCGCc-------------CGCGAUGCa -5'
24429 5' -62.9 NC_005264.1 + 19431 0.66 0.592376
Target:  5'- cGGGUGUGGCcgcgGGGCGCGGGUGg----- -3'
miRNA:   3'- -CCCGCGUCG----CUCGCGCCCGCgaugca -5'
24429 5' -62.9 NC_005264.1 + 83196 0.67 0.573076
Target:  5'- aGGCGCGGCGcgaacuauGCGCuuuuauGGGCcGUUGCGc -3'
miRNA:   3'- cCCGCGUCGCu-------CGCG------CCCG-CGAUGCa -5'
24429 5' -62.9 NC_005264.1 + 8291 0.67 0.573076
Target:  5'- aGGCGCccGUGGGCGaCGGGgGCaccUGCGc -3'
miRNA:   3'- cCCGCGu-CGCUCGC-GCCCgCG---AUGCa -5'
24429 5' -62.9 NC_005264.1 + 5289 0.67 0.573076
Target:  5'- cGGgGCGGCGgcugacccguGGgGCGGGCGaCUgGCGg -3'
miRNA:   3'- cCCgCGUCGC----------UCgCGCCCGC-GA-UGCa -5'
24429 5' -62.9 NC_005264.1 + 127318 0.67 0.573076
Target:  5'- aGGCGCccGUGGGCGaCGGGgGCaccUGCGc -3'
miRNA:   3'- cCCGCGu-CGCUCGC-GCCCgCG---AUGCa -5'
24429 5' -62.9 NC_005264.1 + 124316 0.67 0.573076
Target:  5'- cGGgGCGGCGgcugacccguGGgGCGGGCGaCUgGCGg -3'
miRNA:   3'- cCCgCGUCGC----------UCgCGCCCGC-GA-UGCa -5'
24429 5' -62.9 NC_005264.1 + 19214 0.67 0.573076
Target:  5'- uGGuGUGCAGgGAGCa-GGGCcggcaguuGCUACGUg -3'
miRNA:   3'- -CC-CGCGUCgCUCGcgCCCG--------CGAUGCA- -5'
24429 5' -62.9 NC_005264.1 + 127098 0.67 0.56348
Target:  5'- cGGcCGCAGuCGGGCaCGGGCG--GCGUa -3'
miRNA:   3'- cCC-GCGUC-GCUCGcGCCCGCgaUGCA- -5'
24429 5' -62.9 NC_005264.1 + 36817 0.67 0.56348
Target:  5'- cGGCGCAgGCGAG-GCGcGGCGaagauCGUa -3'
miRNA:   3'- cCCGCGU-CGCUCgCGC-CCGCgau--GCA- -5'
24429 5' -62.9 NC_005264.1 + 21993 0.67 0.56348
Target:  5'- uGGCGCaAGCGAaagGCGCGGcGCGUa---- -3'
miRNA:   3'- cCCGCG-UCGCU---CGCGCC-CGCGaugca -5'
24429 5' -62.9 NC_005264.1 + 8071 0.67 0.56348
Target:  5'- cGGcCGCAGuCGGGCaCGGGCG--GCGUa -3'
miRNA:   3'- cCC-GCGUC-GCUCGcGCCCGCgaUGCA- -5'
24429 5' -62.9 NC_005264.1 + 120296 0.67 0.56348
Target:  5'- cGGCGCGaaGAcGCGCGGaaGCUGCGc -3'
miRNA:   3'- cCCGCGUcgCU-CGCGCCcgCGAUGCa -5'
24429 5' -62.9 NC_005264.1 + 77984 0.67 0.562523
Target:  5'- uGGCGCGagauacgaaggccGCGAuCGCGGGCGaucACGUc -3'
miRNA:   3'- cCCGCGU-------------CGCUcGCGCCCGCga-UGCA- -5'
24429 5' -62.9 NC_005264.1 + 20449 0.67 0.553928
Target:  5'- uGGGCGUAGCcGGCggacaGCGGcGCGC-AUGg -3'
miRNA:   3'- -CCCGCGUCGcUCG-----CGCC-CGCGaUGCa -5'
24429 5' -62.9 NC_005264.1 + 41736 0.67 0.553928
Target:  5'- aGGCgGCAGCG-GCGUauGUGCUGCGa -3'
miRNA:   3'- cCCG-CGUCGCuCGCGccCGCGAUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.