miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24430 3' -56.5 NC_005264.1 + 137217 0.66 0.884199
Target:  5'- -cGCgGCCCCACCGccgccGUGUUCcGcAACg -3'
miRNA:   3'- uuCGgCGGGGUGGUu----CGCAAGuC-UUG- -5'
24430 3' -56.5 NC_005264.1 + 156897 0.66 0.884199
Target:  5'- -cGCUGCCCUgcGCgAGGgGUUCcGAGCc -3'
miRNA:   3'- uuCGGCGGGG--UGgUUCgCAAGuCUUG- -5'
24430 3' -56.5 NC_005264.1 + 37871 0.66 0.884199
Target:  5'- -cGCUGCCCUgcGCgAGGgGUUCcGAGCc -3'
miRNA:   3'- uuCGGCGGGG--UGgUUCgCAAGuCUUG- -5'
24430 3' -56.5 NC_005264.1 + 106769 0.66 0.87706
Target:  5'- -cGCgGCgUCAgCGGGCGUgCAGAACu -3'
miRNA:   3'- uuCGgCGgGGUgGUUCGCAaGUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 38539 0.66 0.87706
Target:  5'- -cGCCGCCCCGCCGucCGgcCGcGACu -3'
miRNA:   3'- uuCGGCGGGGUGGUucGCaaGUcUUG- -5'
24430 3' -56.5 NC_005264.1 + 157566 0.66 0.87706
Target:  5'- -cGCCGCCCCGCCGucCGgcCGcGACu -3'
miRNA:   3'- uuCGGCGGGGUGGUucGCaaGUcUUG- -5'
24430 3' -56.5 NC_005264.1 + 36768 0.66 0.869698
Target:  5'- -cGCCGUCgCCGCUu-GCGcgCAGAAUa -3'
miRNA:   3'- uuCGGCGG-GGUGGuuCGCaaGUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 130888 0.66 0.869698
Target:  5'- -cGUCGCCgCCACUcgcGAGC--UCAGAGCc -3'
miRNA:   3'- uuCGGCGG-GGUGG---UUCGcaAGUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 123860 0.66 0.869698
Target:  5'- cAGgUGUUCCGCCAGGCGgcaCAGAGu -3'
miRNA:   3'- uUCgGCGGGGUGGUUCGCaa-GUCUUg -5'
24430 3' -56.5 NC_005264.1 + 155794 0.66 0.869698
Target:  5'- -cGCCGUCgCCGCUu-GCGcgCAGAAUa -3'
miRNA:   3'- uuCGGCGG-GGUGGuuCGCaaGUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 11862 0.66 0.869698
Target:  5'- -cGUCGCCgCCACUcgcGAGC--UCAGAGCc -3'
miRNA:   3'- uuCGGCGG-GGUGG---UUCGcaAGUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 4834 0.66 0.869698
Target:  5'- cAGgUGUUCCGCCAGGCGgcaCAGAGu -3'
miRNA:   3'- uUCgGCGGGGUGGUUCGCaa-GUCUUg -5'
24430 3' -56.5 NC_005264.1 + 39834 0.66 0.86895
Target:  5'- -uGCCGCCCUgcuuggcgguaaaGCCGGccggcGCGgcCAGGACg -3'
miRNA:   3'- uuCGGCGGGG-------------UGGUU-----CGCaaGUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 158860 0.66 0.86895
Target:  5'- -uGCCGCCCUgcuuggcgguaaaGCCGGccggcGCGgcCAGGACg -3'
miRNA:   3'- uuCGGCGGGG-------------UGGUU-----CGCaaGUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 71104 0.66 0.862117
Target:  5'- cAGCCGCCCUcgGCCcuGGUGagCAGAu- -3'
miRNA:   3'- uUCGGCGGGG--UGGu-UCGCaaGUCUug -5'
24430 3' -56.5 NC_005264.1 + 142857 0.66 0.861348
Target:  5'- gAGGCaCGUCCUugCGAGCGaaggcgcUUCuGGACa -3'
miRNA:   3'- -UUCG-GCGGGGugGUUCGC-------AAGuCUUG- -5'
24430 3' -56.5 NC_005264.1 + 109513 0.66 0.861348
Target:  5'- uGGGCUGCCCCugcugGCCAAGCagccccuGggCAGAc- -3'
miRNA:   3'- -UUCGGCGGGG-----UGGUUCG-------CaaGUCUug -5'
24430 3' -56.5 NC_005264.1 + 9998 0.66 0.854325
Target:  5'- cGAGCCcucgacgaGCCCCGuagcCCGcGcCGUUCGGAACc -3'
miRNA:   3'- -UUCGG--------CGGGGU----GGUuC-GCAAGUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 105368 0.66 0.854325
Target:  5'- -cGCCGCCgCCGCCAggaaaacaGGCGgaUCAcGGCa -3'
miRNA:   3'- uuCGGCGG-GGUGGU--------UCGCa-AGUcUUG- -5'
24430 3' -56.5 NC_005264.1 + 129025 0.66 0.854325
Target:  5'- cGAGCCcucgacgaGCCCCGuagcCCGcGcCGUUCGGAACc -3'
miRNA:   3'- -UUCGG--------CGGGGU----GGUuC-GCAAGUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.