Results 1 - 20 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24430 | 3' | -56.5 | NC_005264.1 | + | 95126 | 1.08 | 0.002584 |
Target: 5'- gAAGCCGCCCCACCAAGCGUUCAGAACg -3' miRNA: 3'- -UUCGGCGGGGUGGUUCGCAAGUCUUG- -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 33246 | 0.75 | 0.384422 |
Target: 5'- -cGCCGCCgCGCCGcAGCGccugCAGAGCg -3' miRNA: 3'- uuCGGCGGgGUGGU-UCGCaa--GUCUUG- -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 67493 | 0.74 | 0.436977 |
Target: 5'- -cGCCGCCCCGCCGAGUccguUUCGcGGCg -3' miRNA: 3'- uuCGGCGGGGUGGUUCGc---AAGUcUUG- -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 81334 | 0.73 | 0.464756 |
Target: 5'- uGAGCCGCuuCCCGCCAGGCuaucugGUaugCAGAGCc -3' miRNA: 3'- -UUCGGCG--GGGUGGUUCG------CAa--GUCUUG- -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 161223 | 0.73 | 0.484739 |
Target: 5'- gGAGCCGCgCCCACC-GGCGUcccguaucccuggccCAGAACc -3' miRNA: 3'- -UUCGGCG-GGGUGGuUCGCAa--------------GUCUUG- -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 42196 | 0.73 | 0.484739 |
Target: 5'- gGAGCCGCgCCCACC-GGCGUcccguaucccuggccCAGAACc -3' miRNA: 3'- -UUCGGCG-GGGUGGuUCGCAa--------------GUCUUG- -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 17772 | 0.72 | 0.532854 |
Target: 5'- aGAGCUGCCCgGCCcGGC-UUCuAGAGCg -3' miRNA: 3'- -UUCGGCGGGgUGGuUCGcAAG-UCUUG- -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 96973 | 0.72 | 0.542892 |
Target: 5'- cAGCCcuUCCCACCcuGCGUUCAGAcACg -3' miRNA: 3'- uUCGGc-GGGGUGGuuCGCAAGUCU-UG- -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 151060 | 0.72 | 0.563146 |
Target: 5'- cGGGCUGCCCCggagugcgaGCCAGGCGccCGGAGa -3' miRNA: 3'- -UUCGGCGGGG---------UGGUUCGCaaGUCUUg -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 32033 | 0.72 | 0.563146 |
Target: 5'- cGGGCUGCCCCggagugcgaGCCAGGCGccCGGAGa -3' miRNA: 3'- -UUCGGCGGGG---------UGGUUCGCaaGUCUUg -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 92453 | 0.71 | 0.583597 |
Target: 5'- cAGGCCGCCcuccagcuCCACCGAGcCGUUCAucAGCa -3' miRNA: 3'- -UUCGGCGG--------GGUGGUUC-GCAAGUc-UUG- -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 117080 | 0.7 | 0.675489 |
Target: 5'- -cGCgCGCCCCGCgCAGGgGUccuauggcaguuuUCGGAGCc -3' miRNA: 3'- uuCG-GCGGGGUG-GUUCgCA-------------AGUCUUG- -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 95374 | 0.7 | 0.666226 |
Target: 5'- -uGCCGCCaaaCUGCCAGGCGU--GGGACu -3' miRNA: 3'- uuCGGCGG---GGUGGUUCGCAagUCUUG- -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 153511 | 0.69 | 0.68677 |
Target: 5'- cGGCCGCCCCugGCgGGGaCGaaCGGAACc -3' miRNA: 3'- uUCGGCGGGG--UGgUUC-GCaaGUCUUG- -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 92249 | 0.69 | 0.727227 |
Target: 5'- aAGGcCCGCCUCGCCAAGCGcgcucUUCGccACg -3' miRNA: 3'- -UUC-GGCGGGGUGGUUCGC-----AAGUcuUG- -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 141942 | 0.69 | 0.737155 |
Target: 5'- uGGGCCGCCCgaGCCAGGCcucauGUUuaacggaaaCAGGGCa -3' miRNA: 3'- -UUCGGCGGGg-UGGUUCG-----CAA---------GUCUUG- -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 62049 | 0.69 | 0.727227 |
Target: 5'- gGAGCCuGCUgCGCCAGGCGUguuuuuUCAGucCg -3' miRNA: 3'- -UUCGG-CGGgGUGGUUCGCA------AGUCuuG- -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 25198 | 0.69 | 0.717215 |
Target: 5'- aGGGCCGCCCUGugucugUCGAGCGgggAGAGCg -3' miRNA: 3'- -UUCGGCGGGGU------GGUUCGCaagUCUUG- -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 46183 | 0.69 | 0.70814 |
Target: 5'- cGGCCGCCCCGCCAucuacaaccucgcucGCGU--AGAGu -3' miRNA: 3'- uUCGGCGGGGUGGUu--------------CGCAagUCUUg -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 97718 | 0.69 | 0.707128 |
Target: 5'- uAAGCaGCgCCGCCAGGCGccaAGAGCu -3' miRNA: 3'- -UUCGgCGgGGUGGUUCGCaagUCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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