miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24430 3' -56.5 NC_005264.1 + 46183 0.69 0.70814
Target:  5'- cGGCCGCCCCGCCAucuacaaccucgcucGCGU--AGAGu -3'
miRNA:   3'- uUCGGCGGGGUGGUu--------------CGCAagUCUUg -5'
24430 3' -56.5 NC_005264.1 + 4161 0.68 0.756721
Target:  5'- -uGCCGCCCaCGCCGcGGUGUggGGAAg -3'
miRNA:   3'- uuCGGCGGG-GUGGU-UCGCAagUCUUg -5'
24430 3' -56.5 NC_005264.1 + 31694 0.68 0.785203
Target:  5'- gGGGCUG-CCCGCCAAaggucGCGcgCGGGGCg -3'
miRNA:   3'- -UUCGGCgGGGUGGUU-----CGCaaGUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 38713 0.68 0.785203
Target:  5'- cAGCuCGCCC--CCAGGCGUagAGGACc -3'
miRNA:   3'- uUCG-GCGGGguGGUUCGCAagUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 96639 0.68 0.775837
Target:  5'- uGGCCGCggaggcgcaccgCCCGCCGAuGCGggCGGuGCg -3'
miRNA:   3'- uUCGGCG------------GGGUGGUU-CGCaaGUCuUG- -5'
24430 3' -56.5 NC_005264.1 + 54872 0.68 0.775837
Target:  5'- aAAGCCGCUCUAgaCAAGCGaagCGGAAg -3'
miRNA:   3'- -UUCGGCGGGGUg-GUUCGCaa-GUCUUg -5'
24430 3' -56.5 NC_005264.1 + 115822 0.68 0.74699
Target:  5'- gAGGCCGCguUCCACCGugaGGUGUcuguUCAGAAg -3'
miRNA:   3'- -UUCGGCG--GGGUGGU---UCGCA----AGUCUUg -5'
24430 3' -56.5 NC_005264.1 + 123188 0.68 0.756721
Target:  5'- -uGCCGCCCaCGCCGcGGUGUggGGAAg -3'
miRNA:   3'- uuCGGCGGG-GUGGU-UCGCAagUCUUg -5'
24430 3' -56.5 NC_005264.1 + 70590 0.68 0.785203
Target:  5'- aGAGCgCGCUUgGCgAGGCGggccUUCAGAGCa -3'
miRNA:   3'- -UUCG-GCGGGgUGgUUCGC----AAGUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 150720 0.68 0.785203
Target:  5'- gGGGCUG-CCCGCCAAaggucGCGcgCGGGGCg -3'
miRNA:   3'- -UUCGGCgGGGUGGUU-----CGCaaGUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 55021 0.68 0.76634
Target:  5'- gGAGUCGCCaaGCCccucauGAGCGUagAGAGCg -3'
miRNA:   3'- -UUCGGCGGggUGG------UUCGCAagUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 157739 0.68 0.785203
Target:  5'- cAGCuCGCCC--CCAGGCGUagAGGACc -3'
miRNA:   3'- uUCG-GCGGGguGGUUCGCAagUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 137473 0.67 0.794427
Target:  5'- uAGCCGCCCUccucgACCAcacgcucGCGUUCAuGAAg -3'
miRNA:   3'- uUCGGCGGGG-----UGGUu------CGCAAGU-CUUg -5'
24430 3' -56.5 NC_005264.1 + 121747 0.67 0.812418
Target:  5'- uAGGCCGCCCCGgCCGGGCccgucUUCuAGGu- -3'
miRNA:   3'- -UUCGGCGGGGU-GGUUCGc----AAG-UCUug -5'
24430 3' -56.5 NC_005264.1 + 146695 0.67 0.812418
Target:  5'- -uGCCGCCCUGCgGAGa-UUgAGAACg -3'
miRNA:   3'- uuCGGCGGGGUGgUUCgcAAgUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 63329 0.67 0.82974
Target:  5'- cGGUCaGCCCCGCCAAGCuGUcCAcGAGu -3'
miRNA:   3'- uUCGG-CGGGGUGGUUCG-CAaGU-CUUg -5'
24430 3' -56.5 NC_005264.1 + 46561 0.67 0.830587
Target:  5'- uAGCCGCCCgCGCCAcggcuuccaagucgcGCGUgCGGAGg -3'
miRNA:   3'- uUCGGCGGG-GUGGUu--------------CGCAaGUCUUg -5'
24430 3' -56.5 NC_005264.1 + 144833 0.67 0.838129
Target:  5'- cGGCCGaCCCGCCGc-CG-UCAGAGCc -3'
miRNA:   3'- uUCGGCgGGGUGGUucGCaAGUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 119167 0.67 0.838129
Target:  5'- cGGCCGCCUuaaCGCCG-GCGcgCAGcGCg -3'
miRNA:   3'- uUCGGCGGG---GUGGUuCGCaaGUCuUG- -5'
24430 3' -56.5 NC_005264.1 + 43648 0.67 0.838129
Target:  5'- -cGCuCGCUUCGCCAGGCGUUgGccgcuGAACc -3'
miRNA:   3'- uuCG-GCGGGGUGGUUCGCAAgU-----CUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.