miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24430 3' -56.5 NC_005264.1 + 95126 1.08 0.002584
Target:  5'- gAAGCCGCCCCACCAAGCGUUCAGAACg -3'
miRNA:   3'- -UUCGGCGGGGUGGUUCGCAAGUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 33246 0.75 0.384422
Target:  5'- -cGCCGCCgCGCCGcAGCGccugCAGAGCg -3'
miRNA:   3'- uuCGGCGGgGUGGU-UCGCaa--GUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 67493 0.74 0.436977
Target:  5'- -cGCCGCCCCGCCGAGUccguUUCGcGGCg -3'
miRNA:   3'- uuCGGCGGGGUGGUUCGc---AAGUcUUG- -5'
24430 3' -56.5 NC_005264.1 + 81334 0.73 0.464756
Target:  5'- uGAGCCGCuuCCCGCCAGGCuaucugGUaugCAGAGCc -3'
miRNA:   3'- -UUCGGCG--GGGUGGUUCG------CAa--GUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 42196 0.73 0.484739
Target:  5'- gGAGCCGCgCCCACC-GGCGUcccguaucccuggccCAGAACc -3'
miRNA:   3'- -UUCGGCG-GGGUGGuUCGCAa--------------GUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 161223 0.73 0.484739
Target:  5'- gGAGCCGCgCCCACC-GGCGUcccguaucccuggccCAGAACc -3'
miRNA:   3'- -UUCGGCG-GGGUGGuUCGCAa--------------GUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 17772 0.72 0.532854
Target:  5'- aGAGCUGCCCgGCCcGGC-UUCuAGAGCg -3'
miRNA:   3'- -UUCGGCGGGgUGGuUCGcAAG-UCUUG- -5'
24430 3' -56.5 NC_005264.1 + 96973 0.72 0.542892
Target:  5'- cAGCCcuUCCCACCcuGCGUUCAGAcACg -3'
miRNA:   3'- uUCGGc-GGGGUGGuuCGCAAGUCU-UG- -5'
24430 3' -56.5 NC_005264.1 + 32033 0.72 0.563146
Target:  5'- cGGGCUGCCCCggagugcgaGCCAGGCGccCGGAGa -3'
miRNA:   3'- -UUCGGCGGGG---------UGGUUCGCaaGUCUUg -5'
24430 3' -56.5 NC_005264.1 + 151060 0.72 0.563146
Target:  5'- cGGGCUGCCCCggagugcgaGCCAGGCGccCGGAGa -3'
miRNA:   3'- -UUCGGCGGGG---------UGGUUCGCaaGUCUUg -5'
24430 3' -56.5 NC_005264.1 + 92453 0.71 0.583597
Target:  5'- cAGGCCGCCcuccagcuCCACCGAGcCGUUCAucAGCa -3'
miRNA:   3'- -UUCGGCGG--------GGUGGUUC-GCAAGUc-UUG- -5'
24430 3' -56.5 NC_005264.1 + 95374 0.7 0.666226
Target:  5'- -uGCCGCCaaaCUGCCAGGCGU--GGGACu -3'
miRNA:   3'- uuCGGCGG---GGUGGUUCGCAagUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 117080 0.7 0.675489
Target:  5'- -cGCgCGCCCCGCgCAGGgGUccuauggcaguuuUCGGAGCc -3'
miRNA:   3'- uuCG-GCGGGGUG-GUUCgCA-------------AGUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 153511 0.69 0.68677
Target:  5'- cGGCCGCCCCugGCgGGGaCGaaCGGAACc -3'
miRNA:   3'- uUCGGCGGGG--UGgUUC-GCaaGUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 97718 0.69 0.707128
Target:  5'- uAAGCaGCgCCGCCAGGCGccaAGAGCu -3'
miRNA:   3'- -UUCGgCGgGGUGGUUCGCaagUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 46183 0.69 0.70814
Target:  5'- cGGCCGCCCCGCCAucuacaaccucgcucGCGU--AGAGu -3'
miRNA:   3'- uUCGGCGGGGUGGUu--------------CGCAagUCUUg -5'
24430 3' -56.5 NC_005264.1 + 25198 0.69 0.717215
Target:  5'- aGGGCCGCCCUGugucugUCGAGCGgggAGAGCg -3'
miRNA:   3'- -UUCGGCGGGGU------GGUUCGCaagUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 62049 0.69 0.727227
Target:  5'- gGAGCCuGCUgCGCCAGGCGUguuuuuUCAGucCg -3'
miRNA:   3'- -UUCGG-CGGgGUGGUUCGCA------AGUCuuG- -5'
24430 3' -56.5 NC_005264.1 + 92249 0.69 0.727227
Target:  5'- aAGGcCCGCCUCGCCAAGCGcgcucUUCGccACg -3'
miRNA:   3'- -UUC-GGCGGGGUGGUUCGC-----AAGUcuUG- -5'
24430 3' -56.5 NC_005264.1 + 120093 0.69 0.737155
Target:  5'- gGAGUCGUgCCCACCGGGUGccgcgCAGAAg -3'
miRNA:   3'- -UUCGGCG-GGGUGGUUCGCaa---GUCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.