miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24430 3' -56.5 NC_005264.1 + 129025 0.66 0.854325
Target:  5'- cGAGCCcucgacgaGCCCCGuagcCCGcGcCGUUCGGAACc -3'
miRNA:   3'- -UUCGG--------CGGGGU----GGUuC-GCAAGUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 72680 0.66 0.846326
Target:  5'- aGAGUCGCCCCcccugaucGCCu-GCGUcaggucCAGAGCu -3'
miRNA:   3'- -UUCGGCGGGG--------UGGuuCGCAa-----GUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 39546 0.66 0.846326
Target:  5'- -cGCCGCCCCGCgGuucccgcGCGgcaagcCGGGACu -3'
miRNA:   3'- uuCGGCGGGGUGgUu------CGCaa----GUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 158573 0.66 0.846326
Target:  5'- -cGCCGCCCCGCgGuucccgcGCGgcaagcCGGGACu -3'
miRNA:   3'- uuCGGCGGGGUGgUu------CGCaa----GUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 48954 0.66 0.846326
Target:  5'- cGGGCCGCUgCGcuCCAAGCaGUaggcgCAGAACu -3'
miRNA:   3'- -UUCGGCGGgGU--GGUUCG-CAa----GUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 140 0.67 0.838129
Target:  5'- cGGCCGCCUuaaCGCCG-GCGcgCAGcGCg -3'
miRNA:   3'- uUCGGCGGG---GUGGUuCGCaaGUCuUG- -5'
24430 3' -56.5 NC_005264.1 + 43648 0.67 0.838129
Target:  5'- -cGCuCGCUUCGCCAGGCGUUgGccgcuGAACc -3'
miRNA:   3'- uuCG-GCGGGGUGGUUCGCAAgU-----CUUG- -5'
24430 3' -56.5 NC_005264.1 + 144833 0.67 0.838129
Target:  5'- cGGCCGaCCCGCCGc-CG-UCAGAGCc -3'
miRNA:   3'- uUCGGCgGGGUGGUucGCaAGUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 119167 0.67 0.838129
Target:  5'- cGGCCGCCUuaaCGCCG-GCGcgCAGcGCg -3'
miRNA:   3'- uUCGGCGGG---GUGGUuCGCaaGUCuUG- -5'
24430 3' -56.5 NC_005264.1 + 101955 0.67 0.835632
Target:  5'- -cGCCGUCCCGCCuggccGGUGUcaucccguggcccaUCAGAu- -3'
miRNA:   3'- uuCGGCGGGGUGGu----UCGCA--------------AGUCUug -5'
24430 3' -56.5 NC_005264.1 + 46561 0.67 0.830587
Target:  5'- uAGCCGCCCgCGCCAcggcuuccaagucgcGCGUgCGGAGg -3'
miRNA:   3'- uUCGGCGGG-GUGGUu--------------CGCAaGUCUUg -5'
24430 3' -56.5 NC_005264.1 + 63329 0.67 0.82974
Target:  5'- cGGUCaGCCCCGCCAAGCuGUcCAcGAGu -3'
miRNA:   3'- uUCGG-CGGGGUGGUUCG-CAaGU-CUUg -5'
24430 3' -56.5 NC_005264.1 + 146695 0.67 0.812418
Target:  5'- -uGCCGCCCUGCgGAGa-UUgAGAACg -3'
miRNA:   3'- uuCGGCGGGGUGgUUCgcAAgUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 121747 0.67 0.812418
Target:  5'- uAGGCCGCCCCGgCCGGGCccgucUUCuAGGu- -3'
miRNA:   3'- -UUCGGCGGGGU-GGUUCGc----AAG-UCUug -5'
24430 3' -56.5 NC_005264.1 + 106015 0.67 0.803502
Target:  5'- cGAGCCGCUagcuagggCCGCCGcgcAGCG--CAGGACa -3'
miRNA:   3'- -UUCGGCGG--------GGUGGU---UCGCaaGUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 131259 0.67 0.803502
Target:  5'- aGAGCagacuCGCCCCACCucuGGCGccuccacgUCGGGAa -3'
miRNA:   3'- -UUCG-----GCGGGGUGGu--UCGCa-------AGUCUUg -5'
24430 3' -56.5 NC_005264.1 + 161835 0.67 0.803502
Target:  5'- -uGCCcCCCCACCAcacgGGCG--CGGGGCa -3'
miRNA:   3'- uuCGGcGGGGUGGU----UCGCaaGUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 4730 0.67 0.803502
Target:  5'- -cGCCGCugCCCGCCGagccGGCGUcCGGGGg -3'
miRNA:   3'- uuCGGCG--GGGUGGU----UCGCAaGUCUUg -5'
24430 3' -56.5 NC_005264.1 + 12232 0.67 0.803502
Target:  5'- aGAGCagacuCGCCCCACCucuGGCGccuccacgUCGGGAa -3'
miRNA:   3'- -UUCG-----GCGGGGUGGu--UCGCa-------AGUCUUg -5'
24430 3' -56.5 NC_005264.1 + 123756 0.67 0.803502
Target:  5'- -cGCCGCugCCCGCCGagccGGCGUcCGGGGg -3'
miRNA:   3'- uuCGGCG--GGGUGGU----UCGCAaGUCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.