miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24430 3' -56.5 NC_005264.1 + 140 0.67 0.838129
Target:  5'- cGGCCGCCUuaaCGCCG-GCGcgCAGcGCg -3'
miRNA:   3'- uUCGGCGGG---GUGGUuCGCaaGUCuUG- -5'
24430 3' -56.5 NC_005264.1 + 4161 0.68 0.756721
Target:  5'- -uGCCGCCCaCGCCGcGGUGUggGGAAg -3'
miRNA:   3'- uuCGGCGGG-GUGGU-UCGCAagUCUUg -5'
24430 3' -56.5 NC_005264.1 + 4730 0.67 0.803502
Target:  5'- -cGCCGCugCCCGCCGagccGGCGUcCGGGGg -3'
miRNA:   3'- uuCGGCG--GGGUGGU----UCGCAaGUCUUg -5'
24430 3' -56.5 NC_005264.1 + 4834 0.66 0.869698
Target:  5'- cAGgUGUUCCGCCAGGCGgcaCAGAGu -3'
miRNA:   3'- uUCgGCGGGGUGGUUCGCaa-GUCUUg -5'
24430 3' -56.5 NC_005264.1 + 9998 0.66 0.854325
Target:  5'- cGAGCCcucgacgaGCCCCGuagcCCGcGcCGUUCGGAACc -3'
miRNA:   3'- -UUCGG--------CGGGGU----GGUuC-GCAAGUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 11862 0.66 0.869698
Target:  5'- -cGUCGCCgCCACUcgcGAGC--UCAGAGCc -3'
miRNA:   3'- uuCGGCGG-GGUGG---UUCGcaAGUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 12232 0.67 0.803502
Target:  5'- aGAGCagacuCGCCCCACCucuGGCGccuccacgUCGGGAa -3'
miRNA:   3'- -UUCG-----GCGGGGUGGu--UCGCa-------AGUCUUg -5'
24430 3' -56.5 NC_005264.1 + 17772 0.72 0.532854
Target:  5'- aGAGCUGCCCgGCCcGGC-UUCuAGAGCg -3'
miRNA:   3'- -UUCGGCGGGgUGGuUCGcAAG-UCUUG- -5'
24430 3' -56.5 NC_005264.1 + 25198 0.69 0.717215
Target:  5'- aGGGCCGCCCUGugucugUCGAGCGgggAGAGCg -3'
miRNA:   3'- -UUCGGCGGGGU------GGUUCGCaagUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 31694 0.68 0.785203
Target:  5'- gGGGCUG-CCCGCCAAaggucGCGcgCGGGGCg -3'
miRNA:   3'- -UUCGGCgGGGUGGUU-----CGCaaGUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 32033 0.72 0.563146
Target:  5'- cGGGCUGCCCCggagugcgaGCCAGGCGccCGGAGa -3'
miRNA:   3'- -UUCGGCGGGG---------UGGUUCGCaaGUCUUg -5'
24430 3' -56.5 NC_005264.1 + 33246 0.75 0.384422
Target:  5'- -cGCCGCCgCGCCGcAGCGccugCAGAGCg -3'
miRNA:   3'- uuCGGCGGgGUGGU-UCGCaa--GUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 36768 0.66 0.869698
Target:  5'- -cGCCGUCgCCGCUu-GCGcgCAGAAUa -3'
miRNA:   3'- uuCGGCGG-GGUGGuuCGCaaGUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 37871 0.66 0.884199
Target:  5'- -cGCUGCCCUgcGCgAGGgGUUCcGAGCc -3'
miRNA:   3'- uuCGGCGGGG--UGgUUCgCAAGuCUUG- -5'
24430 3' -56.5 NC_005264.1 + 38539 0.66 0.87706
Target:  5'- -cGCCGCCCCGCCGucCGgcCGcGACu -3'
miRNA:   3'- uuCGGCGGGGUGGUucGCaaGUcUUG- -5'
24430 3' -56.5 NC_005264.1 + 38713 0.68 0.785203
Target:  5'- cAGCuCGCCC--CCAGGCGUagAGGACc -3'
miRNA:   3'- uUCG-GCGGGguGGUUCGCAagUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 39546 0.66 0.846326
Target:  5'- -cGCCGCCCCGCgGuucccgcGCGgcaagcCGGGACu -3'
miRNA:   3'- uuCGGCGGGGUGgUu------CGCaa----GUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 39834 0.66 0.86895
Target:  5'- -uGCCGCCCUgcuuggcgguaaaGCCGGccggcGCGgcCAGGACg -3'
miRNA:   3'- uuCGGCGGGG-------------UGGUU-----CGCaaGUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 42196 0.73 0.484739
Target:  5'- gGAGCCGCgCCCACC-GGCGUcccguaucccuggccCAGAACc -3'
miRNA:   3'- -UUCGGCG-GGGUGGuUCGCAa--------------GUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 43648 0.67 0.838129
Target:  5'- -cGCuCGCUUCGCCAGGCGUUgGccgcuGAACc -3'
miRNA:   3'- uuCG-GCGGGGUGGUUCGCAAgU-----CUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.