Results 1 - 20 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24430 | 3' | -56.5 | NC_005264.1 | + | 161835 | 0.67 | 0.803502 |
Target: 5'- -uGCCcCCCCACCAcacgGGCG--CGGGGCa -3' miRNA: 3'- uuCGGcGGGGUGGU----UCGCaaGUCUUG- -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 161223 | 0.73 | 0.484739 |
Target: 5'- gGAGCCGCgCCCACC-GGCGUcccguaucccuggccCAGAACc -3' miRNA: 3'- -UUCGGCG-GGGUGGuUCGCAa--------------GUCUUG- -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 158860 | 0.66 | 0.86895 |
Target: 5'- -uGCCGCCCUgcuuggcgguaaaGCCGGccggcGCGgcCAGGACg -3' miRNA: 3'- uuCGGCGGGG-------------UGGUU-----CGCaaGUCUUG- -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 158573 | 0.66 | 0.846326 |
Target: 5'- -cGCCGCCCCGCgGuucccgcGCGgcaagcCGGGACu -3' miRNA: 3'- uuCGGCGGGGUGgUu------CGCaa----GUCUUG- -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 157739 | 0.68 | 0.785203 |
Target: 5'- cAGCuCGCCC--CCAGGCGUagAGGACc -3' miRNA: 3'- uUCG-GCGGGguGGUUCGCAagUCUUG- -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 157566 | 0.66 | 0.87706 |
Target: 5'- -cGCCGCCCCGCCGucCGgcCGcGACu -3' miRNA: 3'- uuCGGCGGGGUGGUucGCaaGUcUUG- -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 156897 | 0.66 | 0.884199 |
Target: 5'- -cGCUGCCCUgcGCgAGGgGUUCcGAGCc -3' miRNA: 3'- uuCGGCGGGG--UGgUUCgCAAGuCUUG- -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 155794 | 0.66 | 0.869698 |
Target: 5'- -cGCCGUCgCCGCUu-GCGcgCAGAAUa -3' miRNA: 3'- uuCGGCGG-GGUGGuuCGCaaGUCUUG- -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 153511 | 0.69 | 0.68677 |
Target: 5'- cGGCCGCCCCugGCgGGGaCGaaCGGAACc -3' miRNA: 3'- uUCGGCGGGG--UGgUUC-GCaaGUCUUG- -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 151060 | 0.72 | 0.563146 |
Target: 5'- cGGGCUGCCCCggagugcgaGCCAGGCGccCGGAGa -3' miRNA: 3'- -UUCGGCGGGG---------UGGUUCGCaaGUCUUg -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 150720 | 0.68 | 0.785203 |
Target: 5'- gGGGCUG-CCCGCCAAaggucGCGcgCGGGGCg -3' miRNA: 3'- -UUCGGCgGGGUGGUU-----CGCaaGUCUUG- -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 146695 | 0.67 | 0.812418 |
Target: 5'- -uGCCGCCCUGCgGAGa-UUgAGAACg -3' miRNA: 3'- uuCGGCGGGGUGgUUCgcAAgUCUUG- -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 144833 | 0.67 | 0.838129 |
Target: 5'- cGGCCGaCCCGCCGc-CG-UCAGAGCc -3' miRNA: 3'- uUCGGCgGGGUGGUucGCaAGUCUUG- -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 142857 | 0.66 | 0.861348 |
Target: 5'- gAGGCaCGUCCUugCGAGCGaaggcgcUUCuGGACa -3' miRNA: 3'- -UUCG-GCGGGGugGUUCGC-------AAGuCUUG- -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 141942 | 0.69 | 0.737155 |
Target: 5'- uGGGCCGCCCgaGCCAGGCcucauGUUuaacggaaaCAGGGCa -3' miRNA: 3'- -UUCGGCGGGg-UGGUUCG-----CAA---------GUCUUG- -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 137473 | 0.67 | 0.794427 |
Target: 5'- uAGCCGCCCUccucgACCAcacgcucGCGUUCAuGAAg -3' miRNA: 3'- uUCGGCGGGG-----UGGUu------CGCAAGU-CUUg -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 137217 | 0.66 | 0.884199 |
Target: 5'- -cGCgGCCCCACCGccgccGUGUUCcGcAACg -3' miRNA: 3'- uuCGgCGGGGUGGUu----CGCAAGuC-UUG- -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 131259 | 0.67 | 0.803502 |
Target: 5'- aGAGCagacuCGCCCCACCucuGGCGccuccacgUCGGGAa -3' miRNA: 3'- -UUCG-----GCGGGGUGGu--UCGCa-------AGUCUUg -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 130888 | 0.66 | 0.869698 |
Target: 5'- -cGUCGCCgCCACUcgcGAGC--UCAGAGCc -3' miRNA: 3'- uuCGGCGG-GGUGG---UUCGcaAGUCUUG- -5' |
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24430 | 3' | -56.5 | NC_005264.1 | + | 129025 | 0.66 | 0.854325 |
Target: 5'- cGAGCCcucgacgaGCCCCGuagcCCGcGcCGUUCGGAACc -3' miRNA: 3'- -UUCGG--------CGGGGU----GGUuC-GCAAGUCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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