miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24430 3' -56.5 NC_005264.1 + 123860 0.66 0.869698
Target:  5'- cAGgUGUUCCGCCAGGCGgcaCAGAGu -3'
miRNA:   3'- uUCgGCGGGGUGGUUCGCaa-GUCUUg -5'
24430 3' -56.5 NC_005264.1 + 123756 0.67 0.803502
Target:  5'- -cGCCGCugCCCGCCGagccGGCGUcCGGGGg -3'
miRNA:   3'- uuCGGCG--GGGUGGU----UCGCAaGUCUUg -5'
24430 3' -56.5 NC_005264.1 + 123188 0.68 0.756721
Target:  5'- -uGCCGCCCaCGCCGcGGUGUggGGAAg -3'
miRNA:   3'- uuCGGCGGG-GUGGU-UCGCAagUCUUg -5'
24430 3' -56.5 NC_005264.1 + 121747 0.67 0.812418
Target:  5'- uAGGCCGCCCCGgCCGGGCccgucUUCuAGGu- -3'
miRNA:   3'- -UUCGGCGGGGU-GGUUCGc----AAG-UCUug -5'
24430 3' -56.5 NC_005264.1 + 120093 0.69 0.737155
Target:  5'- gGAGUCGUgCCCACCGGGUGccgcgCAGAAg -3'
miRNA:   3'- -UUCGGCG-GGGUGGUUCGCaa---GUCUUg -5'
24430 3' -56.5 NC_005264.1 + 119167 0.67 0.838129
Target:  5'- cGGCCGCCUuaaCGCCG-GCGcgCAGcGCg -3'
miRNA:   3'- uUCGGCGGG---GUGGUuCGCaaGUCuUG- -5'
24430 3' -56.5 NC_005264.1 + 117080 0.7 0.675489
Target:  5'- -cGCgCGCCCCGCgCAGGgGUccuauggcaguuuUCGGAGCc -3'
miRNA:   3'- uuCG-GCGGGGUG-GUUCgCA-------------AGUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 115822 0.68 0.74699
Target:  5'- gAGGCCGCguUCCACCGugaGGUGUcuguUCAGAAg -3'
miRNA:   3'- -UUCGGCG--GGGUGGU---UCGCA----AGUCUUg -5'
24430 3' -56.5 NC_005264.1 + 109513 0.66 0.861348
Target:  5'- uGGGCUGCCCCugcugGCCAAGCagccccuGggCAGAc- -3'
miRNA:   3'- -UUCGGCGGGG-----UGGUUCG-------CaaGUCUug -5'
24430 3' -56.5 NC_005264.1 + 106769 0.66 0.87706
Target:  5'- -cGCgGCgUCAgCGGGCGUgCAGAACu -3'
miRNA:   3'- uuCGgCGgGGUgGUUCGCAaGUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 106015 0.67 0.803502
Target:  5'- cGAGCCGCUagcuagggCCGCCGcgcAGCG--CAGGACa -3'
miRNA:   3'- -UUCGGCGG--------GGUGGU---UCGCaaGUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 105368 0.66 0.854325
Target:  5'- -cGCCGCCgCCGCCAggaaaacaGGCGgaUCAcGGCa -3'
miRNA:   3'- uuCGGCGG-GGUGGU--------UCGCa-AGUcUUG- -5'
24430 3' -56.5 NC_005264.1 + 101955 0.67 0.835632
Target:  5'- -cGCCGUCCCGCCuggccGGUGUcaucccguggcccaUCAGAu- -3'
miRNA:   3'- uuCGGCGGGGUGGu----UCGCA--------------AGUCUug -5'
24430 3' -56.5 NC_005264.1 + 97718 0.69 0.707128
Target:  5'- uAAGCaGCgCCGCCAGGCGccaAGAGCu -3'
miRNA:   3'- -UUCGgCGgGGUGGUUCGCaagUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 96973 0.72 0.542892
Target:  5'- cAGCCcuUCCCACCcuGCGUUCAGAcACg -3'
miRNA:   3'- uUCGGc-GGGGUGGuuCGCAAGUCU-UG- -5'
24430 3' -56.5 NC_005264.1 + 96639 0.68 0.775837
Target:  5'- uGGCCGCggaggcgcaccgCCCGCCGAuGCGggCGGuGCg -3'
miRNA:   3'- uUCGGCG------------GGGUGGUU-CGCaaGUCuUG- -5'
24430 3' -56.5 NC_005264.1 + 95374 0.7 0.666226
Target:  5'- -uGCCGCCaaaCUGCCAGGCGU--GGGACu -3'
miRNA:   3'- uuCGGCGG---GGUGGUUCGCAagUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 95126 1.08 0.002584
Target:  5'- gAAGCCGCCCCACCAAGCGUUCAGAACg -3'
miRNA:   3'- -UUCGGCGGGGUGGUUCGCAAGUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 92453 0.71 0.583597
Target:  5'- cAGGCCGCCcuccagcuCCACCGAGcCGUUCAucAGCa -3'
miRNA:   3'- -UUCGGCGG--------GGUGGUUC-GCAAGUc-UUG- -5'
24430 3' -56.5 NC_005264.1 + 92249 0.69 0.727227
Target:  5'- aAGGcCCGCCUCGCCAAGCGcgcucUUCGccACg -3'
miRNA:   3'- -UUC-GGCGGGGUGGUUCGC-----AAGUcuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.