miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24430 3' -56.5 NC_005264.1 + 86146 0.66 0.854325
Target:  5'- -cGCCGCgcuCCgCGCCAAGCuGggCAGAGg -3'
miRNA:   3'- uuCGGCG---GG-GUGGUUCG-CaaGUCUUg -5'
24430 3' -56.5 NC_005264.1 + 81334 0.73 0.464756
Target:  5'- uGAGCCGCuuCCCGCCAGGCuaucugGUaugCAGAGCc -3'
miRNA:   3'- -UUCGGCG--GGGUGGUUCG------CAa--GUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 72680 0.66 0.846326
Target:  5'- aGAGUCGCCCCcccugaucGCCu-GCGUcaggucCAGAGCu -3'
miRNA:   3'- -UUCGGCGGGG--------UGGuuCGCAa-----GUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 71104 0.66 0.862117
Target:  5'- cAGCCGCCCUcgGCCcuGGUGagCAGAu- -3'
miRNA:   3'- uUCGGCGGGG--UGGu-UCGCaaGUCUug -5'
24430 3' -56.5 NC_005264.1 + 70590 0.68 0.785203
Target:  5'- aGAGCgCGCUUgGCgAGGCGggccUUCAGAGCa -3'
miRNA:   3'- -UUCG-GCGGGgUGgUUCGC----AAGUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 67493 0.74 0.436977
Target:  5'- -cGCCGCCCCGCCGAGUccguUUCGcGGCg -3'
miRNA:   3'- uuCGGCGGGGUGGUUCGc---AAGUcUUG- -5'
24430 3' -56.5 NC_005264.1 + 63329 0.67 0.82974
Target:  5'- cGGUCaGCCCCGCCAAGCuGUcCAcGAGu -3'
miRNA:   3'- uUCGG-CGGGGUGGUUCG-CAaGU-CUUg -5'
24430 3' -56.5 NC_005264.1 + 62049 0.69 0.727227
Target:  5'- gGAGCCuGCUgCGCCAGGCGUguuuuuUCAGucCg -3'
miRNA:   3'- -UUCGG-CGGgGUGGUUCGCA------AGUCuuG- -5'
24430 3' -56.5 NC_005264.1 + 57975 0.67 0.794427
Target:  5'- aAAGCUGCCgCAuCCAaucuGGCGUUCgcaauaGGAGCu -3'
miRNA:   3'- -UUCGGCGGgGU-GGU----UCGCAAG------UCUUG- -5'
24430 3' -56.5 NC_005264.1 + 55021 0.68 0.76634
Target:  5'- gGAGUCGCCaaGCCccucauGAGCGUagAGAGCg -3'
miRNA:   3'- -UUCGGCGGggUGG------UUCGCAagUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 54872 0.68 0.775837
Target:  5'- aAAGCCGCUCUAgaCAAGCGaagCGGAAg -3'
miRNA:   3'- -UUCGGCGGGGUg-GUUCGCaa-GUCUUg -5'
24430 3' -56.5 NC_005264.1 + 54239 0.67 0.803502
Target:  5'- gAGGCgGCCCCGCgcgccaacguguCGAGUGggagCGGGGCg -3'
miRNA:   3'- -UUCGgCGGGGUG------------GUUCGCaa--GUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 53022 0.67 0.803502
Target:  5'- uAGCCaacacuGCCCCAgUAAGCGUUCuAGucGCg -3'
miRNA:   3'- uUCGG------CGGGGUgGUUCGCAAG-UCu-UG- -5'
24430 3' -56.5 NC_005264.1 + 48954 0.66 0.846326
Target:  5'- cGGGCCGCUgCGcuCCAAGCaGUaggcgCAGAACu -3'
miRNA:   3'- -UUCGGCGGgGU--GGUUCG-CAa----GUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 46561 0.67 0.830587
Target:  5'- uAGCCGCCCgCGCCAcggcuuccaagucgcGCGUgCGGAGg -3'
miRNA:   3'- uUCGGCGGG-GUGGUu--------------CGCAaGUCUUg -5'
24430 3' -56.5 NC_005264.1 + 46183 0.69 0.70814
Target:  5'- cGGCCGCCCCGCCAucuacaaccucgcucGCGU--AGAGu -3'
miRNA:   3'- uUCGGCGGGGUGGUu--------------CGCAagUCUUg -5'
24430 3' -56.5 NC_005264.1 + 43648 0.67 0.838129
Target:  5'- -cGCuCGCUUCGCCAGGCGUUgGccgcuGAACc -3'
miRNA:   3'- uuCG-GCGGGGUGGUUCGCAAgU-----CUUG- -5'
24430 3' -56.5 NC_005264.1 + 42196 0.73 0.484739
Target:  5'- gGAGCCGCgCCCACC-GGCGUcccguaucccuggccCAGAACc -3'
miRNA:   3'- -UUCGGCG-GGGUGGuUCGCAa--------------GUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 39834 0.66 0.86895
Target:  5'- -uGCCGCCCUgcuuggcgguaaaGCCGGccggcGCGgcCAGGACg -3'
miRNA:   3'- uuCGGCGGGG-------------UGGUU-----CGCaaGUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 39546 0.66 0.846326
Target:  5'- -cGCCGCCCCGCgGuucccgcGCGgcaagcCGGGACu -3'
miRNA:   3'- uuCGGCGGGGUGgUu------CGCaa----GUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.