miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24430 3' -56.5 NC_005264.1 + 151060 0.72 0.563146
Target:  5'- cGGGCUGCCCCggagugcgaGCCAGGCGccCGGAGa -3'
miRNA:   3'- -UUCGGCGGGG---------UGGUUCGCaaGUCUUg -5'
24430 3' -56.5 NC_005264.1 + 96973 0.72 0.542892
Target:  5'- cAGCCcuUCCCACCcuGCGUUCAGAcACg -3'
miRNA:   3'- uUCGGc-GGGGUGGuuCGCAAGUCU-UG- -5'
24430 3' -56.5 NC_005264.1 + 17772 0.72 0.532854
Target:  5'- aGAGCUGCCCgGCCcGGC-UUCuAGAGCg -3'
miRNA:   3'- -UUCGGCGGGgUGGuUCGcAAG-UCUUG- -5'
24430 3' -56.5 NC_005264.1 + 43648 0.67 0.838129
Target:  5'- -cGCuCGCUUCGCCAGGCGUUgGccgcuGAACc -3'
miRNA:   3'- uuCG-GCGGGGUGGUUCGCAAgU-----CUUG- -5'
24430 3' -56.5 NC_005264.1 + 81334 0.73 0.464756
Target:  5'- uGAGCCGCuuCCCGCCAGGCuaucugGUaugCAGAGCc -3'
miRNA:   3'- -UUCGGCG--GGGUGGUUCG------CAa--GUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 101955 0.67 0.835632
Target:  5'- -cGCCGUCCCGCCuggccGGUGUcaucccguggcccaUCAGAu- -3'
miRNA:   3'- uuCGGCGGGGUGGu----UCGCA--------------AGUCUug -5'
24430 3' -56.5 NC_005264.1 + 62049 0.69 0.727227
Target:  5'- gGAGCCuGCUgCGCCAGGCGUguuuuuUCAGucCg -3'
miRNA:   3'- -UUCGG-CGGgGUGGUUCGCA------AGUCuuG- -5'
24430 3' -56.5 NC_005264.1 + 141942 0.69 0.737155
Target:  5'- uGGGCCGCCCgaGCCAGGCcucauGUUuaacggaaaCAGGGCa -3'
miRNA:   3'- -UUCGGCGGGg-UGGUUCG-----CAA---------GUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 115822 0.68 0.74699
Target:  5'- gAGGCCGCguUCCACCGugaGGUGUcuguUCAGAAg -3'
miRNA:   3'- -UUCGGCG--GGGUGGU---UCGCA----AGUCUUg -5'
24430 3' -56.5 NC_005264.1 + 106015 0.67 0.803502
Target:  5'- cGAGCCGCUagcuagggCCGCCGcgcAGCG--CAGGACa -3'
miRNA:   3'- -UUCGGCGG--------GGUGGU---UCGCaaGUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 131259 0.67 0.803502
Target:  5'- aGAGCagacuCGCCCCACCucuGGCGccuccacgUCGGGAa -3'
miRNA:   3'- -UUCG-----GCGGGGUGGu--UCGCa-------AGUCUUg -5'
24430 3' -56.5 NC_005264.1 + 123860 0.66 0.869698
Target:  5'- cAGgUGUUCCGCCAGGCGgcaCAGAGu -3'
miRNA:   3'- uUCgGCGGGGUGGUUCGCaa-GUCUUg -5'
24430 3' -56.5 NC_005264.1 + 155794 0.66 0.869698
Target:  5'- -cGCCGUCgCCGCUu-GCGcgCAGAAUa -3'
miRNA:   3'- uuCGGCGG-GGUGGuuCGCaaGUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 157566 0.66 0.87706
Target:  5'- -cGCCGCCCCGCCGucCGgcCGcGACu -3'
miRNA:   3'- uuCGGCGGGGUGGUucGCaaGUcUUG- -5'
24430 3' -56.5 NC_005264.1 + 137217 0.66 0.884199
Target:  5'- -cGCgGCCCCACCGccgccGUGUUCcGcAACg -3'
miRNA:   3'- uuCGgCGGGGUGGUu----CGCAAGuC-UUG- -5'
24430 3' -56.5 NC_005264.1 + 156897 0.66 0.884199
Target:  5'- -cGCUGCCCUgcGCgAGGgGUUCcGAGCc -3'
miRNA:   3'- uuCGGCGGGG--UGgUUCgCAAGuCUUG- -5'
24430 3' -56.5 NC_005264.1 + 121747 0.67 0.812418
Target:  5'- uAGGCCGCCCCGgCCGGGCccgucUUCuAGGu- -3'
miRNA:   3'- -UUCGGCGGGGU-GGUUCGc----AAG-UCUug -5'
24430 3' -56.5 NC_005264.1 + 146695 0.67 0.812418
Target:  5'- -uGCCGCCCUGCgGAGa-UUgAGAACg -3'
miRNA:   3'- uuCGGCGGGGUGgUUCgcAAgUCUUG- -5'
24430 3' -56.5 NC_005264.1 + 63329 0.67 0.82974
Target:  5'- cGGUCaGCCCCGCCAAGCuGUcCAcGAGu -3'
miRNA:   3'- uUCGG-CGGGGUGGUUCG-CAaGU-CUUg -5'
24430 3' -56.5 NC_005264.1 + 123188 0.68 0.756721
Target:  5'- -uGCCGCCCaCGCCGcGGUGUggGGAAg -3'
miRNA:   3'- uuCGGCGGG-GUGGU-UCGCAagUCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.