miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24431 3' -55.6 NC_005264.1 + 100609 0.66 0.937438
Target:  5'- aUACCGACGaCCCCGaagCGGccgcgGAGCg -3'
miRNA:   3'- -AUGGCUGUaGGGGCg--GCUcaua-CUCG- -5'
24431 3' -55.6 NC_005264.1 + 146408 0.66 0.937438
Target:  5'- cGCgGGCAggCCCCGCgGcAGUc-GAGCg -3'
miRNA:   3'- aUGgCUGUa-GGGGCGgC-UCAuaCUCG- -5'
24431 3' -55.6 NC_005264.1 + 35954 0.66 0.934505
Target:  5'- cGCCGACGccgCCCCcacaaucuagcgguaGCuCGuacguGUAUGGGCa -3'
miRNA:   3'- aUGGCUGUa--GGGG---------------CG-GCu----CAUACUCG- -5'
24431 3' -55.6 NC_005264.1 + 154981 0.66 0.934505
Target:  5'- cGCCGACGccgCCCCcacaaucuagcgguaGCuCGuacguGUAUGGGCa -3'
miRNA:   3'- aUGGCUGUa--GGGG---------------CG-GCu----CAUACUCG- -5'
24431 3' -55.6 NC_005264.1 + 90388 0.66 0.932502
Target:  5'- gACCGGCggCgCCCGCCGAuacaacGUGUucGAcGCg -3'
miRNA:   3'- aUGGCUGuaG-GGGCGGCU------CAUA--CU-CG- -5'
24431 3' -55.6 NC_005264.1 + 3846 0.66 0.932502
Target:  5'- -cCUGGCAugggUCCUgCGCCGGGgauUGGGCu -3'
miRNA:   3'- auGGCUGU----AGGG-GCGGCUCau-ACUCG- -5'
24431 3' -55.6 NC_005264.1 + 59718 0.66 0.932502
Target:  5'- cGCCGGCGgcuaCCgCGCCGGacGUAUuGGCu -3'
miRNA:   3'- aUGGCUGUa---GGgGCGGCU--CAUAcUCG- -5'
24431 3' -55.6 NC_005264.1 + 125711 0.66 0.932502
Target:  5'- cGCCGGCGccuggugcCCCUGUggaaCGAGUAguUGGGCg -3'
miRNA:   3'- aUGGCUGUa-------GGGGCG----GCUCAU--ACUCG- -5'
24431 3' -55.6 NC_005264.1 + 110849 0.66 0.927328
Target:  5'- cACCGACGguccUCUCgGCgaagauCGAGcGUGAGCg -3'
miRNA:   3'- aUGGCUGU----AGGGgCG------GCUCaUACUCG- -5'
24431 3' -55.6 NC_005264.1 + 13424 0.66 0.927328
Target:  5'- cGCgCGACcgCCgCCGCCGAGacgcGAcGCg -3'
miRNA:   3'- aUG-GCUGuaGG-GGCGGCUCaua-CU-CG- -5'
24431 3' -55.6 NC_005264.1 + 132451 0.66 0.927328
Target:  5'- cGCgCGACcgCCgCCGCCGAGacgcGAcGCg -3'
miRNA:   3'- aUG-GCUGuaGG-GGCGGCUCaua-CU-CG- -5'
24431 3' -55.6 NC_005264.1 + 12294 0.66 0.921916
Target:  5'- --aCGGCccUCCCCGCCcGAGccugGAGCc -3'
miRNA:   3'- augGCUGu-AGGGGCGG-CUCaua-CUCG- -5'
24431 3' -55.6 NC_005264.1 + 131321 0.66 0.921916
Target:  5'- --aCGGCccUCCCCGCCcGAGccugGAGCc -3'
miRNA:   3'- augGCUGu-AGGGGCGG-CUCaua-CUCG- -5'
24431 3' -55.6 NC_005264.1 + 102854 0.66 0.921916
Target:  5'- gGCCGucucgcucGCggCCaCCGCCGcGUGgcUGAGCg -3'
miRNA:   3'- aUGGC--------UGuaGG-GGCGGCuCAU--ACUCG- -5'
24431 3' -55.6 NC_005264.1 + 104825 0.66 0.910379
Target:  5'- cGCaCGACggCCuguCCGCCGGGgccgcUGAGCc -3'
miRNA:   3'- aUG-GCUGuaGG---GGCGGCUCau---ACUCG- -5'
24431 3' -55.6 NC_005264.1 + 51924 0.66 0.910379
Target:  5'- -uCCGGuCGUCCgCGCCGAGcuUG-GCg -3'
miRNA:   3'- auGGCU-GUAGGgGCGGCUCauACuCG- -5'
24431 3' -55.6 NC_005264.1 + 158843 0.67 0.904256
Target:  5'- aGCCGACAgagaacccgCCgCCGCCGA--AUGcGGCu -3'
miRNA:   3'- aUGGCUGUa--------GG-GGCGGCUcaUAC-UCG- -5'
24431 3' -55.6 NC_005264.1 + 27897 0.67 0.904256
Target:  5'- gGCCaGCGUCUCgG-CGAGgGUGAGCg -3'
miRNA:   3'- aUGGcUGUAGGGgCgGCUCaUACUCG- -5'
24431 3' -55.6 NC_005264.1 + 90100 0.67 0.904256
Target:  5'- aGCgGACAggCCCGCCGaAGUGUaccGCg -3'
miRNA:   3'- aUGgCUGUagGGGCGGC-UCAUAcu-CG- -5'
24431 3' -55.6 NC_005264.1 + 104058 0.67 0.903631
Target:  5'- uUGCCGACAUCCUcugCGCCGAccaccgcGcGUGcGCc -3'
miRNA:   3'- -AUGGCUGUAGGG---GCGGCU-------CaUACuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.