Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24431 | 3' | -55.6 | NC_005264.1 | + | 104825 | 0.66 | 0.910379 |
Target: 5'- cGCaCGACggCCuguCCGCCGGGgccgcUGAGCc -3' miRNA: 3'- aUG-GCUGuaGG---GGCGGCUCau---ACUCG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 102854 | 0.66 | 0.921916 |
Target: 5'- gGCCGucucgcucGCggCCaCCGCCGcGUGgcUGAGCg -3' miRNA: 3'- aUGGC--------UGuaGG-GGCGGCuCAU--ACUCG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 12294 | 0.66 | 0.921916 |
Target: 5'- --aCGGCccUCCCCGCCcGAGccugGAGCc -3' miRNA: 3'- augGCUGu-AGGGGCGG-CUCaua-CUCG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 13424 | 0.66 | 0.927328 |
Target: 5'- cGCgCGACcgCCgCCGCCGAGacgcGAcGCg -3' miRNA: 3'- aUG-GCUGuaGG-GGCGGCUCaua-CU-CG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 110849 | 0.66 | 0.927328 |
Target: 5'- cACCGACGguccUCUCgGCgaagauCGAGcGUGAGCg -3' miRNA: 3'- aUGGCUGU----AGGGgCG------GCUCaUACUCG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 125711 | 0.66 | 0.932502 |
Target: 5'- cGCCGGCGccuggugcCCCUGUggaaCGAGUAguUGGGCg -3' miRNA: 3'- aUGGCUGUa-------GGGGCG----GCUCAU--ACUCG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 35954 | 0.66 | 0.934505 |
Target: 5'- cGCCGACGccgCCCCcacaaucuagcgguaGCuCGuacguGUAUGGGCa -3' miRNA: 3'- aUGGCUGUa--GGGG---------------CG-GCu----CAUACUCG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 146408 | 0.66 | 0.937438 |
Target: 5'- cGCgGGCAggCCCCGCgGcAGUc-GAGCg -3' miRNA: 3'- aUGgCUGUa-GGGGCGgC-UCAuaCUCG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 154981 | 0.66 | 0.934505 |
Target: 5'- cGCCGACGccgCCCCcacaaucuagcgguaGCuCGuacguGUAUGGGCa -3' miRNA: 3'- aUGGCUGUa--GGGG---------------CG-GCu----CAUACUCG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 59718 | 0.66 | 0.932502 |
Target: 5'- cGCCGGCGgcuaCCgCGCCGGacGUAUuGGCu -3' miRNA: 3'- aUGGCUGUa---GGgGCGGCU--CAUAcUCG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 51924 | 0.66 | 0.910379 |
Target: 5'- -uCCGGuCGUCCgCGCCGAGcuUG-GCg -3' miRNA: 3'- auGGCU-GUAGGgGCGGCUCauACuCG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 131321 | 0.66 | 0.921916 |
Target: 5'- --aCGGCccUCCCCGCCcGAGccugGAGCc -3' miRNA: 3'- augGCUGu-AGGGGCGG-CUCaua-CUCG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 132451 | 0.66 | 0.927328 |
Target: 5'- cGCgCGACcgCCgCCGCCGAGacgcGAcGCg -3' miRNA: 3'- aUG-GCUGuaGG-GGCGGCUCaua-CU-CG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 90388 | 0.66 | 0.932502 |
Target: 5'- gACCGGCggCgCCCGCCGAuacaacGUGUucGAcGCg -3' miRNA: 3'- aUGGCUGuaG-GGGCGGCU------CAUA--CU-CG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 3846 | 0.66 | 0.932502 |
Target: 5'- -cCUGGCAugggUCCUgCGCCGGGgauUGGGCu -3' miRNA: 3'- auGGCUGU----AGGG-GCGGCUCau-ACUCG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 100609 | 0.66 | 0.937438 |
Target: 5'- aUACCGACGaCCCCGaagCGGccgcgGAGCg -3' miRNA: 3'- -AUGGCUGUaGGGGCg--GCUcaua-CUCG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 44623 | 0.67 | 0.8845 |
Target: 5'- gGCgGACAUCaCCgCgGCCGAGg--GAGUg -3' miRNA: 3'- aUGgCUGUAG-GG-G-CGGCUCauaCUCG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 152869 | 0.67 | 0.891313 |
Target: 5'- gGCuCGGCAUCgCCGCaCGGGUccG-GCa -3' miRNA: 3'- aUG-GCUGUAGgGGCG-GCUCAuaCuCG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 123183 | 0.67 | 0.8979 |
Target: 5'- aUGCUuGCcgCCCaCGCCGcGGUGUGGGg -3' miRNA: 3'- -AUGGcUGuaGGG-GCGGC-UCAUACUCg -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 90100 | 0.67 | 0.904256 |
Target: 5'- aGCgGACAggCCCGCCGaAGUGUaccGCg -3' miRNA: 3'- aUGgCUGUagGGGCGGC-UCAUAcu-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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