miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24431 3' -55.6 NC_005264.1 + 94709 1.1 0.002667
Target:  5'- cUACCGACAUCCCCGCCGAGUAUGAGCg -3'
miRNA:   3'- -AUGGCUGUAGGGGCGGCUCAUACUCG- -5'
24431 3' -55.6 NC_005264.1 + 67490 0.74 0.547973
Target:  5'- gGCCG-CcgCCCCGCCGAGUccGuuucGCg -3'
miRNA:   3'- aUGGCuGuaGGGGCGGCUCAuaCu---CG- -5'
24431 3' -55.6 NC_005264.1 + 25133 0.73 0.578114
Target:  5'- cGCCG-UGUCUCgGCCGAGUaguuggccGUGAGCg -3'
miRNA:   3'- aUGGCuGUAGGGgCGGCUCA--------UACUCG- -5'
24431 3' -55.6 NC_005264.1 + 161125 0.72 0.633111
Target:  5'- --aCGACAUCCCUGCCuacgggcaccuggcaGGGUGUGcGCu -3'
miRNA:   3'- augGCUGUAGGGGCGG---------------CUCAUACuCG- -5'
24431 3' -55.6 NC_005264.1 + 42098 0.72 0.633111
Target:  5'- --aCGACAUCCCUGCCuacgggcaccuggcaGGGUGUGcGCu -3'
miRNA:   3'- augGCUGUAGGGGCGG---------------CUCAUACuCG- -5'
24431 3' -55.6 NC_005264.1 + 108231 0.72 0.639242
Target:  5'- gGCCGAUGUCCCgcacgCGCCGAGgcc-GGCg -3'
miRNA:   3'- aUGGCUGUAGGG-----GCGGCUCauacUCG- -5'
24431 3' -55.6 NC_005264.1 + 115998 0.71 0.710151
Target:  5'- gGCCGuguGCGUCgCCCucuGUCGGGUAUGGGUc -3'
miRNA:   3'- aUGGC---UGUAG-GGG---CGGCUCAUACUCG- -5'
24431 3' -55.6 NC_005264.1 + 144660 0.7 0.729949
Target:  5'- aGCCGGCAUUCUugCGCCGAGcGUcAGCc -3'
miRNA:   3'- aUGGCUGUAGGG--GCGGCUCaUAcUCG- -5'
24431 3' -55.6 NC_005264.1 + 27736 0.7 0.749411
Target:  5'- uUACCGAaugaCCCCGCCGGGa--GGGUg -3'
miRNA:   3'- -AUGGCUgua-GGGGCGGCUCauaCUCG- -5'
24431 3' -55.6 NC_005264.1 + 12131 0.7 0.749411
Target:  5'- gGCgGGCAgCCCCGCCGA----GAGCc -3'
miRNA:   3'- aUGgCUGUaGGGGCGGCUcauaCUCG- -5'
24431 3' -55.6 NC_005264.1 + 85453 0.7 0.749411
Target:  5'- uUGCCGGCGUCUggGCCGAcuccaGUGAGCu -3'
miRNA:   3'- -AUGGCUGUAGGggCGGCUca---UACUCG- -5'
24431 3' -55.6 NC_005264.1 + 131158 0.7 0.749411
Target:  5'- gGCgGGCAgCCCCGCCGA----GAGCc -3'
miRNA:   3'- aUGgCUGUaGGGGCGGCUcauaCUCG- -5'
24431 3' -55.6 NC_005264.1 + 63325 0.7 0.749411
Target:  5'- cUACCGGuCAgCCCCGCCaagcuguccacGAGUGUGuccGCg -3'
miRNA:   3'- -AUGGCU-GUaGGGGCGG-----------CUCAUACu--CG- -5'
24431 3' -55.6 NC_005264.1 + 42564 0.7 0.758992
Target:  5'- cGCCGGCAgCCuuGCCGgAGgc-GAGCc -3'
miRNA:   3'- aUGGCUGUaGGggCGGC-UCauaCUCG- -5'
24431 3' -55.6 NC_005264.1 + 92300 0.69 0.787027
Target:  5'- gUGCC-ACGUCUCCGUCGAGUAcagGAacaGCa -3'
miRNA:   3'- -AUGGcUGUAGGGGCGGCUCAUa--CU---CG- -5'
24431 3' -55.6 NC_005264.1 + 91227 0.69 0.805037
Target:  5'- cUGCCG-CcgCCUCGCCG-GUGaGGGCu -3'
miRNA:   3'- -AUGGCuGuaGGGGCGGCuCAUaCUCG- -5'
24431 3' -55.6 NC_005264.1 + 104484 0.69 0.805037
Target:  5'- cGCCGg---CCCCGCCaGAGUAcgacagGGGCg -3'
miRNA:   3'- aUGGCuguaGGGGCGG-CUCAUa-----CUCG- -5'
24431 3' -55.6 NC_005264.1 + 162704 0.69 0.822424
Target:  5'- cGCCGGCGUUaaggcggCCGCCGGG---GAGCg -3'
miRNA:   3'- aUGGCUGUAGg------GGCGGCUCauaCUCG- -5'
24431 3' -55.6 NC_005264.1 + 116257 0.69 0.822424
Target:  5'- cGCCguGACAUccguuaCCCCGCCGcAG-AUGAGUu -3'
miRNA:   3'- aUGG--CUGUA------GGGGCGGC-UCaUACUCG- -5'
24431 3' -55.6 NC_005264.1 + 43678 0.69 0.822424
Target:  5'- cGCCGGCGUUaaggcggCCGCCGGG---GAGCg -3'
miRNA:   3'- aUGGCUGUAGg------GGCGGCUCauaCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.