Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24431 | 3' | -55.6 | NC_005264.1 | + | 59265 | 0.67 | 0.90047 |
Target: 5'- gGCCGAUccgAUCUCCGCguUGAGUaacaucggcgugaacGUGGGCc -3' miRNA: 3'- aUGGCUG---UAGGGGCG--GCUCA---------------UACUCG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 4156 | 0.67 | 0.8979 |
Target: 5'- aUGCUuGCcgCCCaCGCCGcGGUGUGGGg -3' miRNA: 3'- -AUGGcUGuaGGG-GCGGC-UCAUACUCg -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 123183 | 0.67 | 0.8979 |
Target: 5'- aUGCUuGCcgCCCaCGCCGcGGUGUGGGg -3' miRNA: 3'- -AUGGcUGuaGGG-GCGGC-UCAUACUCg -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 152869 | 0.67 | 0.891313 |
Target: 5'- gGCuCGGCAUCgCCGCaCGGGUccG-GCa -3' miRNA: 3'- aUG-GCUGUAGgGGCG-GCUCAuaCuCG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 33843 | 0.67 | 0.891313 |
Target: 5'- gGCuCGGCAUCgCCGCaCGGGUccG-GCa -3' miRNA: 3'- aUG-GCUGUAGgGGCG-GCUCAuaCuCG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 44623 | 0.67 | 0.8845 |
Target: 5'- gGCgGACAUCaCCgCgGCCGAGg--GAGUg -3' miRNA: 3'- aUGgCUGUAG-GG-G-CGGCUCauaCUCG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 55131 | 0.67 | 0.8845 |
Target: 5'- -uUCGACA-CCCCGCCGuGcgcUGUGcuGGCg -3' miRNA: 3'- auGGCUGUaGGGGCGGCuC---AUAC--UCG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 50230 | 0.67 | 0.877464 |
Target: 5'- gACCGGCGggCCCCGCUcccAGUuUGuGCa -3' miRNA: 3'- aUGGCUGUa-GGGGCGGc--UCAuACuCG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 157873 | 0.67 | 0.877464 |
Target: 5'- cGCgGGCA-CCgUGCCGAGUcgGUGAcGCg -3' miRNA: 3'- aUGgCUGUaGGgGCGGCUCA--UACU-CG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 38847 | 0.67 | 0.877464 |
Target: 5'- cGCgGGCA-CCgUGCCGAGUcgGUGAcGCg -3' miRNA: 3'- aUGgCUGUaGGgGCGGCUCA--UACU-CG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 125185 | 0.67 | 0.876748 |
Target: 5'- aUGCCGGCAaccgaagccuucaUCUCCGCCacguccuuGUGUaGAGCg -3' miRNA: 3'- -AUGGCUGU-------------AGGGGCGGcu------CAUA-CUCG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 111852 | 0.67 | 0.870209 |
Target: 5'- -uCCG-CA-CCgCUGCCGGGUAgcgGAGCg -3' miRNA: 3'- auGGCuGUaGG-GGCGGCUCAUa--CUCG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 123419 | 0.68 | 0.862742 |
Target: 5'- aACCGAUGUCUCCGgCGc---UGAGCa -3' miRNA: 3'- aUGGCUGUAGGGGCgGCucauACUCG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 4392 | 0.68 | 0.862742 |
Target: 5'- aACCGAUGUCUCCGgCGc---UGAGCa -3' miRNA: 3'- aUGGCUGUAGGGGCgGCucauACUCG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 39370 | 0.68 | 0.862742 |
Target: 5'- cACCG-CAUgCCCGUacauaGAGgucAUGAGCg -3' miRNA: 3'- aUGGCuGUAgGGGCGg----CUCa--UACUCG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 110183 | 0.68 | 0.847191 |
Target: 5'- gUGCCcu--UCCCCGCCGAGUcAUcGGCc -3' miRNA: 3'- -AUGGcuguAGGGGCGGCUCA-UAcUCG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 17712 | 0.68 | 0.83912 |
Target: 5'- aAUCGACGucaggucaUCCCCGCCGAugucguuucuGUGgcuuagugGAGCu -3' miRNA: 3'- aUGGCUGU--------AGGGGCGGCU----------CAUa-------CUCG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 62016 | 0.68 | 0.83912 |
Target: 5'- cGCCGuCGUCCCUGUCGcgcucuagcaaGGUucgGAGCc -3' miRNA: 3'- aUGGCuGUAGGGGCGGC-----------UCAua-CUCG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 146934 | 0.68 | 0.83912 |
Target: 5'- cACCuacACGUCCCUGCCG-GUcgGcGGCg -3' miRNA: 3'- aUGGc--UGUAGGGGCGGCuCAuaC-UCG- -5' |
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24431 | 3' | -55.6 | NC_005264.1 | + | 130472 | 0.68 | 0.830862 |
Target: 5'- cGCCGGCAUCCUCGCC-AGaac-AGCc -3' miRNA: 3'- aUGGCUGUAGGGGCGGcUCauacUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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