miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24431 3' -55.6 NC_005264.1 + 3846 0.66 0.932502
Target:  5'- -cCUGGCAugggUCCUgCGCCGGGgauUGGGCu -3'
miRNA:   3'- auGGCUGU----AGGG-GCGGCUCau-ACUCG- -5'
24431 3' -55.6 NC_005264.1 + 4156 0.67 0.8979
Target:  5'- aUGCUuGCcgCCCaCGCCGcGGUGUGGGg -3'
miRNA:   3'- -AUGGcUGuaGGG-GCGGC-UCAUACUCg -5'
24431 3' -55.6 NC_005264.1 + 4392 0.68 0.862742
Target:  5'- aACCGAUGUCUCCGgCGc---UGAGCa -3'
miRNA:   3'- aUGGCUGUAGGGGCgGCucauACUCG- -5'
24431 3' -55.6 NC_005264.1 + 11445 0.68 0.830862
Target:  5'- cGCCGGCAUCCUCGCC-AGaac-AGCc -3'
miRNA:   3'- aUGGCUGUAGGGGCGGcUCauacUCG- -5'
24431 3' -55.6 NC_005264.1 + 12131 0.7 0.749411
Target:  5'- gGCgGGCAgCCCCGCCGA----GAGCc -3'
miRNA:   3'- aUGgCUGUaGGGGCGGCUcauaCUCG- -5'
24431 3' -55.6 NC_005264.1 + 12294 0.66 0.921916
Target:  5'- --aCGGCccUCCCCGCCcGAGccugGAGCc -3'
miRNA:   3'- augGCUGu-AGGGGCGG-CUCaua-CUCG- -5'
24431 3' -55.6 NC_005264.1 + 13424 0.66 0.927328
Target:  5'- cGCgCGACcgCCgCCGCCGAGacgcGAcGCg -3'
miRNA:   3'- aUG-GCUGuaGG-GGCGGCUCaua-CU-CG- -5'
24431 3' -55.6 NC_005264.1 + 17712 0.68 0.83912
Target:  5'- aAUCGACGucaggucaUCCCCGCCGAugucguuucuGUGgcuuagugGAGCu -3'
miRNA:   3'- aUGGCUGU--------AGGGGCGGCU----------CAUa-------CUCG- -5'
24431 3' -55.6 NC_005264.1 + 25133 0.73 0.578114
Target:  5'- cGCCG-UGUCUCgGCCGAGUaguuggccGUGAGCg -3'
miRNA:   3'- aUGGCuGUAGGGgCGGCUCA--------UACUCG- -5'
24431 3' -55.6 NC_005264.1 + 27736 0.7 0.749411
Target:  5'- uUACCGAaugaCCCCGCCGGGa--GGGUg -3'
miRNA:   3'- -AUGGCUgua-GGGGCGGCUCauaCUCG- -5'
24431 3' -55.6 NC_005264.1 + 27897 0.67 0.904256
Target:  5'- gGCCaGCGUCUCgG-CGAGgGUGAGCg -3'
miRNA:   3'- aUGGcUGUAGGGgCgGCUCaUACUCG- -5'
24431 3' -55.6 NC_005264.1 + 33843 0.67 0.891313
Target:  5'- gGCuCGGCAUCgCCGCaCGGGUccG-GCa -3'
miRNA:   3'- aUG-GCUGUAGgGGCG-GCUCAuaCuCG- -5'
24431 3' -55.6 NC_005264.1 + 35954 0.66 0.934505
Target:  5'- cGCCGACGccgCCCCcacaaucuagcgguaGCuCGuacguGUAUGGGCa -3'
miRNA:   3'- aUGGCUGUa--GGGG---------------CG-GCu----CAUACUCG- -5'
24431 3' -55.6 NC_005264.1 + 38847 0.67 0.877464
Target:  5'- cGCgGGCA-CCgUGCCGAGUcgGUGAcGCg -3'
miRNA:   3'- aUGgCUGUaGGgGCGGCUCA--UACU-CG- -5'
24431 3' -55.6 NC_005264.1 + 39370 0.68 0.862742
Target:  5'- cACCG-CAUgCCCGUacauaGAGgucAUGAGCg -3'
miRNA:   3'- aUGGCuGUAgGGGCGg----CUCa--UACUCG- -5'
24431 3' -55.6 NC_005264.1 + 42098 0.72 0.633111
Target:  5'- --aCGACAUCCCUGCCuacgggcaccuggcaGGGUGUGcGCu -3'
miRNA:   3'- augGCUGUAGGGGCGG---------------CUCAUACuCG- -5'
24431 3' -55.6 NC_005264.1 + 42564 0.7 0.758992
Target:  5'- cGCCGGCAgCCuuGCCGgAGgc-GAGCc -3'
miRNA:   3'- aUGGCUGUaGGggCGGC-UCauaCUCG- -5'
24431 3' -55.6 NC_005264.1 + 43678 0.69 0.822424
Target:  5'- cGCCGGCGUUaaggcggCCGCCGGG---GAGCg -3'
miRNA:   3'- aUGGCUGUAGg------GGCGGCUCauaCUCG- -5'
24431 3' -55.6 NC_005264.1 + 44623 0.67 0.8845
Target:  5'- gGCgGACAUCaCCgCgGCCGAGg--GAGUg -3'
miRNA:   3'- aUGgCUGUAG-GG-G-CGGCUCauaCUCG- -5'
24431 3' -55.6 NC_005264.1 + 50230 0.67 0.877464
Target:  5'- gACCGGCGggCCCCGCUcccAGUuUGuGCa -3'
miRNA:   3'- aUGGCUGUa-GGGGCGGc--UCAuACuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.