miRNA display CGI


Results 1 - 20 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24431 3' -55.6 NC_005264.1 + 90100 0.67 0.904256
Target:  5'- aGCgGACAggCCCGCCGaAGUGUaccGCg -3'
miRNA:   3'- aUGgCUGUagGGGCGGC-UCAUAcu-CG- -5'
24431 3' -55.6 NC_005264.1 + 110183 0.68 0.847191
Target:  5'- gUGCCcu--UCCCCGCCGAGUcAUcGGCc -3'
miRNA:   3'- -AUGGcuguAGGGGCGGCUCA-UAcUCG- -5'
24431 3' -55.6 NC_005264.1 + 39370 0.68 0.862742
Target:  5'- cACCG-CAUgCCCGUacauaGAGgucAUGAGCg -3'
miRNA:   3'- aUGGCuGUAgGGGCGg----CUCa--UACUCG- -5'
24431 3' -55.6 NC_005264.1 + 123419 0.68 0.862742
Target:  5'- aACCGAUGUCUCCGgCGc---UGAGCa -3'
miRNA:   3'- aUGGCUGUAGGGGCgGCucauACUCG- -5'
24431 3' -55.6 NC_005264.1 + 157873 0.67 0.877464
Target:  5'- cGCgGGCA-CCgUGCCGAGUcgGUGAcGCg -3'
miRNA:   3'- aUGgCUGUaGGgGCGGCUCA--UACU-CG- -5'
24431 3' -55.6 NC_005264.1 + 55131 0.67 0.8845
Target:  5'- -uUCGACA-CCCCGCCGuGcgcUGUGcuGGCg -3'
miRNA:   3'- auGGCUGUaGGGGCGGCuC---AUAC--UCG- -5'
24431 3' -55.6 NC_005264.1 + 44623 0.67 0.8845
Target:  5'- gGCgGACAUCaCCgCgGCCGAGg--GAGUg -3'
miRNA:   3'- aUGgCUGUAG-GG-G-CGGCUCauaCUCG- -5'
24431 3' -55.6 NC_005264.1 + 152869 0.67 0.891313
Target:  5'- gGCuCGGCAUCgCCGCaCGGGUccG-GCa -3'
miRNA:   3'- aUG-GCUGUAGgGGCG-GCUCAuaCuCG- -5'
24431 3' -55.6 NC_005264.1 + 123183 0.67 0.8979
Target:  5'- aUGCUuGCcgCCCaCGCCGcGGUGUGGGg -3'
miRNA:   3'- -AUGGcUGuaGGG-GCGGC-UCAUACUCg -5'
24431 3' -55.6 NC_005264.1 + 146934 0.68 0.83912
Target:  5'- cACCuacACGUCCCUGCCG-GUcgGcGGCg -3'
miRNA:   3'- aUGGc--UGUAGGGGCGGCuCAuaC-UCG- -5'
24431 3' -55.6 NC_005264.1 + 62016 0.68 0.83912
Target:  5'- cGCCGuCGUCCCUGUCGcgcucuagcaaGGUucgGAGCc -3'
miRNA:   3'- aUGGCuGUAGGGGCGGC-----------UCAua-CUCG- -5'
24431 3' -55.6 NC_005264.1 + 130472 0.68 0.830862
Target:  5'- cGCCGGCAUCCUCGCC-AGaac-AGCc -3'
miRNA:   3'- aUGGCUGUAGGGGCGGcUCauacUCG- -5'
24431 3' -55.6 NC_005264.1 + 161125 0.72 0.633111
Target:  5'- --aCGACAUCCCUGCCuacgggcaccuggcaGGGUGUGcGCu -3'
miRNA:   3'- augGCUGUAGGGGCGG---------------CUCAUACuCG- -5'
24431 3' -55.6 NC_005264.1 + 115998 0.71 0.710151
Target:  5'- gGCCGuguGCGUCgCCCucuGUCGGGUAUGGGUc -3'
miRNA:   3'- aUGGC---UGUAG-GGG---CGGCUCAUACUCG- -5'
24431 3' -55.6 NC_005264.1 + 131158 0.7 0.749411
Target:  5'- gGCgGGCAgCCCCGCCGA----GAGCc -3'
miRNA:   3'- aUGgCUGUaGGGGCGGCUcauaCUCG- -5'
24431 3' -55.6 NC_005264.1 + 63325 0.7 0.749411
Target:  5'- cUACCGGuCAgCCCCGCCaagcuguccacGAGUGUGuccGCg -3'
miRNA:   3'- -AUGGCU-GUaGGGGCGG-----------CUCAUACu--CG- -5'
24431 3' -55.6 NC_005264.1 + 42564 0.7 0.758992
Target:  5'- cGCCGGCAgCCuuGCCGgAGgc-GAGCc -3'
miRNA:   3'- aUGGCUGUaGGggCGGC-UCauaCUCG- -5'
24431 3' -55.6 NC_005264.1 + 91227 0.69 0.805037
Target:  5'- cUGCCG-CcgCCUCGCCG-GUGaGGGCu -3'
miRNA:   3'- -AUGGCuGuaGGGGCGGCuCAUaCUCG- -5'
24431 3' -55.6 NC_005264.1 + 116257 0.69 0.822424
Target:  5'- cGCCguGACAUccguuaCCCCGCCGcAG-AUGAGUu -3'
miRNA:   3'- aUGG--CUGUA------GGGGCGGC-UCaUACUCG- -5'
24431 3' -55.6 NC_005264.1 + 162704 0.69 0.822424
Target:  5'- cGCCGGCGUUaaggcggCCGCCGGG---GAGCg -3'
miRNA:   3'- aUGGCUGUAGg------GGCGGCUCauaCUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.