Results 1 - 20 of 37 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24431 | 5' | -49.2 | NC_005264.1 | + | 40582 | 0.66 | 0.999115 |
Target: 5'- -aGCUGaAC-CGGCAGcUGCUGUUGGa -3' miRNA: 3'- agCGACaUGcGCUGUCuAUGAUAGCU- -5' |
|||||||
24431 | 5' | -49.2 | NC_005264.1 | + | 62593 | 0.66 | 0.999115 |
Target: 5'- aUCGCgUGUAUGUGAUcuAGAga-UAUCGGu -3' miRNA: 3'- -AGCG-ACAUGCGCUG--UCUaugAUAGCU- -5' |
|||||||
24431 | 5' | -49.2 | NC_005264.1 | + | 100819 | 0.66 | 0.999115 |
Target: 5'- cUUGCUaGaGCGCGACAGggACgacggCGAg -3' miRNA: 3'- -AGCGA-CaUGCGCUGUCuaUGaua--GCU- -5' |
|||||||
24431 | 5' | -49.2 | NC_005264.1 | + | 159609 | 0.66 | 0.999115 |
Target: 5'- -aGCUGaAC-CGGCAGcUGCUGUUGGa -3' miRNA: 3'- agCGACaUGcGCUGUCuAUGAUAGCU- -5' |
|||||||
24431 | 5' | -49.2 | NC_005264.1 | + | 36083 | 0.66 | 0.999115 |
Target: 5'- gUCGCUGUcccucucuucgGCGCGGCuggcagauGGGUACUcgCc- -3' miRNA: 3'- -AGCGACA-----------UGCGCUG--------UCUAUGAuaGcu -5' |
|||||||
24431 | 5' | -49.2 | NC_005264.1 | + | 27692 | 0.66 | 0.999115 |
Target: 5'- -aGCUGUACGCccugacGACGGAUG-UcgCGGg -3' miRNA: 3'- agCGACAUGCG------CUGUCUAUgAuaGCU- -5' |
|||||||
24431 | 5' | -49.2 | NC_005264.1 | + | 6167 | 0.66 | 0.998686 |
Target: 5'- -gGCUGUACaacaGCGACGcGUcGCUGUUGAu -3' miRNA: 3'- agCGACAUG----CGCUGUcUA-UGAUAGCU- -5' |
|||||||
24431 | 5' | -49.2 | NC_005264.1 | + | 52960 | 0.66 | 0.998686 |
Target: 5'- gCGCcucUACGCGGCGG-UGCUG-CGAa -3' miRNA: 3'- aGCGac-AUGCGCUGUCuAUGAUaGCU- -5' |
|||||||
24431 | 5' | -49.2 | NC_005264.1 | + | 52518 | 0.66 | 0.998582 |
Target: 5'- cUGCUGgauuucgugcgccGCGUGGCAGAgUACUgcAUCGAu -3' miRNA: 3'- aGCGACa------------UGCGCUGUCU-AUGA--UAGCU- -5' |
|||||||
24431 | 5' | -49.2 | NC_005264.1 | + | 157401 | 0.66 | 0.998383 |
Target: 5'- aUGCUGUacgGCGCGGCGuuGGUAUuagucguUAUCGGg -3' miRNA: 3'- aGCGACA---UGCGCUGU--CUAUG-------AUAGCU- -5' |
|||||||
24431 | 5' | -49.2 | NC_005264.1 | + | 153364 | 0.67 | 0.998094 |
Target: 5'- cUCGCUG-ACGCGaggucgGCAGAgUACguUCGAg -3' miRNA: 3'- -AGCGACaUGCGC------UGUCU-AUGauAGCU- -5' |
|||||||
24431 | 5' | -49.2 | NC_005264.1 | + | 88235 | 0.67 | 0.998094 |
Target: 5'- aUCGCUucUACGCaGAcCAGAUACUGUUu- -3' miRNA: 3'- -AGCGAc-AUGCG-CU-GUCUAUGAUAGcu -5' |
|||||||
24431 | 5' | -49.2 | NC_005264.1 | + | 34337 | 0.67 | 0.998094 |
Target: 5'- cUCGCUG-ACGCGaggucgGCAGAgUACguUCGAg -3' miRNA: 3'- -AGCGACaUGCGC------UGUCU-AUGauAGCU- -5' |
|||||||
24431 | 5' | -49.2 | NC_005264.1 | + | 106517 | 0.67 | 0.99729 |
Target: 5'- -gGCgGUGCGCGACGGcgGCagcgCGGc -3' miRNA: 3'- agCGaCAUGCGCUGUCuaUGaua-GCU- -5' |
|||||||
24431 | 5' | -49.2 | NC_005264.1 | + | 157279 | 0.67 | 0.996224 |
Target: 5'- gCGCUGUcCGCGG----UGCUGUCGGu -3' miRNA: 3'- aGCGACAuGCGCUgucuAUGAUAGCU- -5' |
|||||||
24431 | 5' | -49.2 | NC_005264.1 | + | 259 | 0.67 | 0.996224 |
Target: 5'- gCGCUGgACGCGGCAGAaGCccacuuagAUCa- -3' miRNA: 3'- aGCGACaUGCGCUGUCUaUGa-------UAGcu -5' |
|||||||
24431 | 5' | -49.2 | NC_005264.1 | + | 38252 | 0.67 | 0.996224 |
Target: 5'- gCGCUGUcCGCGG----UGCUGUCGGu -3' miRNA: 3'- aGCGACAuGCGCUgucuAUGAUAGCU- -5' |
|||||||
24431 | 5' | -49.2 | NC_005264.1 | + | 52459 | 0.68 | 0.994835 |
Target: 5'- aCGCcGUGCGCGuaGCAGAaaacGCUAcCGAa -3' miRNA: 3'- aGCGaCAUGCGC--UGUCUa---UGAUaGCU- -5' |
|||||||
24431 | 5' | -49.2 | NC_005264.1 | + | 36153 | 0.68 | 0.994756 |
Target: 5'- gCGCUGUgcgagcucgggaaGCGCGACGGG-ACgAUCGc -3' miRNA: 3'- aGCGACA-------------UGCGCUGUCUaUGaUAGCu -5' |
|||||||
24431 | 5' | -49.2 | NC_005264.1 | + | 138337 | 0.68 | 0.994 |
Target: 5'- gCGC-GUGCGCGACAaggcgcccgaacGcgACUAUCGc -3' miRNA: 3'- aGCGaCAUGCGCUGU------------CuaUGAUAGCu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home