Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24431 | 5' | -49.2 | NC_005264.1 | + | 116409 | 0.69 | 0.990824 |
Target: 5'- cUCGCUGagccCGCGGCAGGUcGCUGggGGc -3' miRNA: 3'- -AGCGACau--GCGCUGUCUA-UGAUagCU- -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 125965 | 0.69 | 0.990824 |
Target: 5'- -gGCUcgGCGCaGGCAGAUAC-GUCGAc -3' miRNA: 3'- agCGAcaUGCG-CUGUCUAUGaUAGCU- -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 6939 | 0.69 | 0.990824 |
Target: 5'- -gGCUcgGCGCaGGCAGAUAC-GUCGAc -3' miRNA: 3'- agCGAcaUGCG-CUGUCUAUGaUAGCU- -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 3979 | 0.69 | 0.986455 |
Target: 5'- aUGCUGUuagccgcuucgGCgGCGGCGGGUucuCUGUCGGc -3' miRNA: 3'- aGCGACA-----------UG-CGCUGUCUAu--GAUAGCU- -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 88168 | 0.69 | 0.986286 |
Target: 5'- cCGCUGUACGCGguGCugcGGUGCUcaaagaaGUUGAc -3' miRNA: 3'- aGCGACAUGCGC--UGu--CUAUGA-------UAGCU- -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 151896 | 0.69 | 0.98469 |
Target: 5'- -aGCUGUAUGUGGCGGAggggACgg-CGGc -3' miRNA: 3'- agCGACAUGCGCUGUCUa---UGauaGCU- -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 129600 | 0.7 | 0.980642 |
Target: 5'- gCGCUGcgGCGCGGCGGcgaaGCUucUCGAg -3' miRNA: 3'- aGCGACa-UGCGCUGUCua--UGAu-AGCU- -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 142779 | 0.7 | 0.973141 |
Target: 5'- cUCGCaGUACGCGgACAGGUAuCUGgacgUGAc -3' miRNA: 3'- -AGCGaCAUGCGC-UGUCUAU-GAUa---GCU- -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 11632 | 0.71 | 0.970227 |
Target: 5'- gUCGUggaacgGUaucaGCGCGGCAGGgcUGCUGUCGu -3' miRNA: 3'- -AGCGa-----CA----UGCGCUGUCU--AUGAUAGCu -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 91999 | 0.71 | 0.960142 |
Target: 5'- cCGC-GUACGUGGCAGAguuuCUAUCu- -3' miRNA: 3'- aGCGaCAUGCGCUGUCUau--GAUAGcu -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 154957 | 0.73 | 0.928097 |
Target: 5'- aCGUcGUACGCGcGCAGAUGCgcagCGAa -3' miRNA: 3'- aGCGaCAUGCGC-UGUCUAUGaua-GCU- -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 33109 | 0.73 | 0.916645 |
Target: 5'- cUCGCUG-ACGCG-CA--UACUGUCGAu -3' miRNA: 3'- -AGCGACaUGCGCuGUcuAUGAUAGCU- -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 152136 | 0.73 | 0.916645 |
Target: 5'- cUCGCUG-ACGCG-CA--UACUGUCGAu -3' miRNA: 3'- -AGCGACaUGCGCuGUcuAUGAUAGCU- -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 77289 | 0.73 | 0.910534 |
Target: 5'- aCGaauuggGUGCGCGGCAGAUAgUGUCu- -3' miRNA: 3'- aGCga----CAUGCGCUGUCUAUgAUAGcu -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 8906 | 0.76 | 0.800293 |
Target: 5'- gUCGCUGgagACGCGcgucuuCAGGUACUcgCGGa -3' miRNA: 3'- -AGCGACa--UGCGCu-----GUCUAUGAuaGCU- -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 87512 | 0.78 | 0.720515 |
Target: 5'- gCGCUGUuaccggcacuggcGCGCGGCAGAUGCUGcagCGu -3' miRNA: 3'- aGCGACA-------------UGCGCUGUCUAUGAUa--GCu -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 94743 | 1.1 | 0.01249 |
Target: 5'- gUCGCUGUACGCGACAGAUACUAUCGAc -3' miRNA: 3'- -AGCGACAUGCGCUGUCUAUGAUAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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