Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24431 | 5' | -49.2 | NC_005264.1 | + | 259 | 0.67 | 0.996224 |
Target: 5'- gCGCUGgACGCGGCAGAaGCccacuuagAUCa- -3' miRNA: 3'- aGCGACaUGCGCUGUCUaUGa-------UAGcu -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 3979 | 0.69 | 0.986455 |
Target: 5'- aUGCUGUuagccgcuucgGCgGCGGCGGGUucuCUGUCGGc -3' miRNA: 3'- aGCGACA-----------UG-CGCUGUCUAu--GAUAGCU- -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 6167 | 0.66 | 0.998686 |
Target: 5'- -gGCUGUACaacaGCGACGcGUcGCUGUUGAu -3' miRNA: 3'- agCGACAUG----CGCUGUcUA-UGAUAGCU- -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 6939 | 0.69 | 0.990824 |
Target: 5'- -gGCUcgGCGCaGGCAGAUAC-GUCGAc -3' miRNA: 3'- agCGAcaUGCG-CUGUCUAUGaUAGCU- -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 8906 | 0.76 | 0.800293 |
Target: 5'- gUCGCUGgagACGCGcgucuuCAGGUACUcgCGGa -3' miRNA: 3'- -AGCGACa--UGCGCu-----GUCUAUGAuaGCU- -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 11632 | 0.71 | 0.970227 |
Target: 5'- gUCGUggaacgGUaucaGCGCGGCAGGgcUGCUGUCGu -3' miRNA: 3'- -AGCGa-----CA----UGCGCUGUCU--AUGAUAGCu -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 27692 | 0.66 | 0.999115 |
Target: 5'- -aGCUGUACGCccugacGACGGAUG-UcgCGGg -3' miRNA: 3'- agCGACAUGCG------CUGUCUAUgAuaGCU- -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 33109 | 0.73 | 0.916645 |
Target: 5'- cUCGCUG-ACGCG-CA--UACUGUCGAu -3' miRNA: 3'- -AGCGACaUGCGCuGUcuAUGAUAGCU- -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 34337 | 0.67 | 0.998094 |
Target: 5'- cUCGCUG-ACGCGaggucgGCAGAgUACguUCGAg -3' miRNA: 3'- -AGCGACaUGCGC------UGUCU-AUGauAGCU- -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 36083 | 0.66 | 0.999115 |
Target: 5'- gUCGCUGUcccucucuucgGCGCGGCuggcagauGGGUACUcgCc- -3' miRNA: 3'- -AGCGACA-----------UGCGCUG--------UCUAUGAuaGcu -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 36153 | 0.68 | 0.994756 |
Target: 5'- gCGCUGUgcgagcucgggaaGCGCGACGGG-ACgAUCGc -3' miRNA: 3'- aGCGACA-------------UGCGCUGUCUaUGaUAGCu -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 38252 | 0.67 | 0.996224 |
Target: 5'- gCGCUGUcCGCGG----UGCUGUCGGu -3' miRNA: 3'- aGCGACAuGCGCUgucuAUGAUAGCU- -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 40582 | 0.66 | 0.999115 |
Target: 5'- -aGCUGaAC-CGGCAGcUGCUGUUGGa -3' miRNA: 3'- agCGACaUGcGCUGUCuAUGAUAGCU- -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 52459 | 0.68 | 0.994835 |
Target: 5'- aCGCcGUGCGCGuaGCAGAaaacGCUAcCGAa -3' miRNA: 3'- aGCGaCAUGCGC--UGUCUa---UGAUaGCU- -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 52518 | 0.66 | 0.998582 |
Target: 5'- cUGCUGgauuucgugcgccGCGUGGCAGAgUACUgcAUCGAu -3' miRNA: 3'- aGCGACa------------UGCGCUGUCU-AUGA--UAGCU- -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 52960 | 0.66 | 0.998686 |
Target: 5'- gCGCcucUACGCGGCGG-UGCUG-CGAa -3' miRNA: 3'- aGCGac-AUGCGCUGUCuAUGAUaGCU- -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 62593 | 0.66 | 0.999115 |
Target: 5'- aUCGCgUGUAUGUGAUcuAGAga-UAUCGGu -3' miRNA: 3'- -AGCG-ACAUGCGCUG--UCUaugAUAGCU- -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 77289 | 0.73 | 0.910534 |
Target: 5'- aCGaauuggGUGCGCGGCAGAUAgUGUCu- -3' miRNA: 3'- aGCga----CAUGCGCUGUCUAUgAUAGcu -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 87512 | 0.78 | 0.720515 |
Target: 5'- gCGCUGUuaccggcacuggcGCGCGGCAGAUGCUGcagCGu -3' miRNA: 3'- aGCGACA-------------UGCGCUGUCUAUGAUa--GCu -5' |
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24431 | 5' | -49.2 | NC_005264.1 | + | 88168 | 0.69 | 0.986286 |
Target: 5'- cCGCUGUACGCGguGCugcGGUGCUcaaagaaGUUGAc -3' miRNA: 3'- aGCGACAUGCGC--UGu--CUAUGA-------UAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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