miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24432 3' -55.2 NC_005264.1 + 33583 0.66 0.943605
Target:  5'- gGUA-GCGGAGCCaugUUCggacGAGGCUUGc -3'
miRNA:   3'- gCAUgCGCUUCGGa--AGGa---CUCCGAGC- -5'
24432 3' -55.2 NC_005264.1 + 72318 0.66 0.93899
Target:  5'- gCGUugGCGGuuuGGCCUUCgUcGAuGGC-CGa -3'
miRNA:   3'- -GCAugCGCU---UCGGAAGgA-CU-CCGaGC- -5'
24432 3' -55.2 NC_005264.1 + 25014 0.66 0.93899
Target:  5'- --gGCGCugcauGCCUcUCCUGAGGCgccCGg -3'
miRNA:   3'- gcaUGCGcuu--CGGA-AGGACUCCGa--GC- -5'
24432 3' -55.2 NC_005264.1 + 50333 0.66 0.934138
Target:  5'- aGUACGCGgcGUCgaccuugUCCUGcGGCa-- -3'
miRNA:   3'- gCAUGCGCuuCGGa------AGGACuCCGagc -5'
24432 3' -55.2 NC_005264.1 + 42150 0.66 0.934138
Target:  5'- uGUcgGCGCGAGGCCUUguuuggucCCUGuaGCUCu -3'
miRNA:   3'- gCA--UGCGCUUCGGAA--------GGACucCGAGc -5'
24432 3' -55.2 NC_005264.1 + 145163 0.66 0.92905
Target:  5'- ---cCGCGGccucGGCUgcgCCUGAGGCUaCGa -3'
miRNA:   3'- gcauGCGCU----UCGGaa-GGACUCCGA-GC- -5'
24432 3' -55.2 NC_005264.1 + 128535 0.66 0.92905
Target:  5'- gCGUcagGCGCGgcGCCcUCgaGGGGCccUCGa -3'
miRNA:   3'- -GCA---UGCGCuuCGGaAGgaCUCCG--AGC- -5'
24432 3' -55.2 NC_005264.1 + 9508 0.66 0.92905
Target:  5'- gCGUcagGCGCGgcGCCcUCgaGGGGCccUCGa -3'
miRNA:   3'- -GCA---UGCGCuuCGGaAGgaCUCCG--AGC- -5'
24432 3' -55.2 NC_005264.1 + 14943 0.67 0.923724
Target:  5'- gCGUcuACGCGGcAGCCgaCCUgGAGGCaUCu -3'
miRNA:   3'- -GCA--UGCGCU-UCGGaaGGA-CUCCG-AGc -5'
24432 3' -55.2 NC_005264.1 + 79910 0.67 0.923724
Target:  5'- gCGUGCGCGuGGCCgacgUCUGcGGCg-- -3'
miRNA:   3'- -GCAUGCGCuUCGGaa--GGACuCCGagc -5'
24432 3' -55.2 NC_005264.1 + 137019 0.67 0.923724
Target:  5'- --aACGCGuacAGCacaugCCUGAGGCUUa -3'
miRNA:   3'- gcaUGCGCu--UCGgaa--GGACUCCGAGc -5'
24432 3' -55.2 NC_005264.1 + 9633 0.67 0.91816
Target:  5'- uGUACGCGAucacguauAGC--UCCUGAagcagGGCUUGg -3'
miRNA:   3'- gCAUGCGCU--------UCGgaAGGACU-----CCGAGC- -5'
24432 3' -55.2 NC_005264.1 + 27679 0.67 0.91816
Target:  5'- gGUACGCGGcuGGCCUcugCCUcgccGAcGCUCGc -3'
miRNA:   3'- gCAUGCGCU--UCGGAa--GGA----CUcCGAGC- -5'
24432 3' -55.2 NC_005264.1 + 106619 0.67 0.912359
Target:  5'- gCGUACGUGAAGgaCgguUUCUGGGGCgCGu -3'
miRNA:   3'- -GCAUGCGCUUCg-Ga--AGGACUCCGaGC- -5'
24432 3' -55.2 NC_005264.1 + 43243 0.67 0.912359
Target:  5'- --cACGUGccGCCUggaCUGAGGUUCa -3'
miRNA:   3'- gcaUGCGCuuCGGAag-GACUCCGAGc -5'
24432 3' -55.2 NC_005264.1 + 78688 0.67 0.906323
Target:  5'- gCGcGCGCGcuGCgaccaCUUCCcGGGGCUCGc -3'
miRNA:   3'- -GCaUGCGCuuCG-----GAAGGaCUCCGAGC- -5'
24432 3' -55.2 NC_005264.1 + 21222 0.67 0.906323
Target:  5'- uCGgcCGCGAcGGCUUUCCgcguugacGAcGGCUCGa -3'
miRNA:   3'- -GCauGCGCU-UCGGAAGGa-------CU-CCGAGC- -5'
24432 3' -55.2 NC_005264.1 + 6131 0.67 0.906323
Target:  5'- uGUuCGCGAAGCaccgcccgUCCUGGGuCUCGc -3'
miRNA:   3'- gCAuGCGCUUCGga------AGGACUCcGAGC- -5'
24432 3' -55.2 NC_005264.1 + 47916 0.67 0.893553
Target:  5'- aCGUGugccCGCGGAGCCUUaUCgacgGAgaacGGCUCGg -3'
miRNA:   3'- -GCAU----GCGCUUCGGAA-GGa---CU----CCGAGC- -5'
24432 3' -55.2 NC_005264.1 + 133320 0.68 0.886826
Target:  5'- uGUACG-GGAG-UUUCCUguacgGAGGCUCGg -3'
miRNA:   3'- gCAUGCgCUUCgGAAGGA-----CUCCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.