Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24432 | 3' | -55.2 | NC_005264.1 | + | 6131 | 0.67 | 0.906323 |
Target: 5'- uGUuCGCGAAGCaccgcccgUCCUGGGuCUCGc -3' miRNA: 3'- gCAuGCGCUUCGga------AGGACUCcGAGC- -5' |
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24432 | 3' | -55.2 | NC_005264.1 | + | 9508 | 0.66 | 0.92905 |
Target: 5'- gCGUcagGCGCGgcGCCcUCgaGGGGCccUCGa -3' miRNA: 3'- -GCA---UGCGCuuCGGaAGgaCUCCG--AGC- -5' |
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24432 | 3' | -55.2 | NC_005264.1 | + | 9633 | 0.67 | 0.91816 |
Target: 5'- uGUACGCGAucacguauAGC--UCCUGAagcagGGCUUGg -3' miRNA: 3'- gCAUGCGCU--------UCGgaAGGACU-----CCGAGC- -5' |
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24432 | 3' | -55.2 | NC_005264.1 | + | 14943 | 0.67 | 0.923724 |
Target: 5'- gCGUcuACGCGGcAGCCgaCCUgGAGGCaUCu -3' miRNA: 3'- -GCA--UGCGCU-UCGGaaGGA-CUCCG-AGc -5' |
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24432 | 3' | -55.2 | NC_005264.1 | + | 21222 | 0.67 | 0.906323 |
Target: 5'- uCGgcCGCGAcGGCUUUCCgcguugacGAcGGCUCGa -3' miRNA: 3'- -GCauGCGCU-UCGGAAGGa-------CU-CCGAGC- -5' |
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24432 | 3' | -55.2 | NC_005264.1 | + | 25014 | 0.66 | 0.93899 |
Target: 5'- --gGCGCugcauGCCUcUCCUGAGGCgccCGg -3' miRNA: 3'- gcaUGCGcuu--CGGA-AGGACUCCGa--GC- -5' |
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24432 | 3' | -55.2 | NC_005264.1 | + | 27679 | 0.67 | 0.91816 |
Target: 5'- gGUACGCGGcuGGCCUcugCCUcgccGAcGCUCGc -3' miRNA: 3'- gCAUGCGCU--UCGGAa--GGA----CUcCGAGC- -5' |
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24432 | 3' | -55.2 | NC_005264.1 | + | 33583 | 0.66 | 0.943605 |
Target: 5'- gGUA-GCGGAGCCaugUUCggacGAGGCUUGc -3' miRNA: 3'- gCAUgCGCUUCGGa--AGGa---CUCCGAGC- -5' |
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24432 | 3' | -55.2 | NC_005264.1 | + | 42150 | 0.66 | 0.934138 |
Target: 5'- uGUcgGCGCGAGGCCUUguuuggucCCUGuaGCUCu -3' miRNA: 3'- gCA--UGCGCUUCGGAA--------GGACucCGAGc -5' |
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24432 | 3' | -55.2 | NC_005264.1 | + | 43243 | 0.67 | 0.912359 |
Target: 5'- --cACGUGccGCCUggaCUGAGGUUCa -3' miRNA: 3'- gcaUGCGCuuCGGAag-GACUCCGAGc -5' |
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24432 | 3' | -55.2 | NC_005264.1 | + | 47916 | 0.67 | 0.893553 |
Target: 5'- aCGUGugccCGCGGAGCCUUaUCgacgGAgaacGGCUCGg -3' miRNA: 3'- -GCAU----GCGCUUCGGAA-GGa---CU----CCGAGC- -5' |
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24432 | 3' | -55.2 | NC_005264.1 | + | 50333 | 0.66 | 0.934138 |
Target: 5'- aGUACGCGgcGUCgaccuugUCCUGcGGCa-- -3' miRNA: 3'- gCAUGCGCuuCGGa------AGGACuCCGagc -5' |
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24432 | 3' | -55.2 | NC_005264.1 | + | 70949 | 0.7 | 0.790263 |
Target: 5'- aGUACGUGGAGCUg-CCUGGGcugucGCUCa -3' miRNA: 3'- gCAUGCGCUUCGGaaGGACUC-----CGAGc -5' |
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24432 | 3' | -55.2 | NC_005264.1 | + | 72318 | 0.66 | 0.93899 |
Target: 5'- gCGUugGCGGuuuGGCCUUCgUcGAuGGC-CGa -3' miRNA: 3'- -GCAugCGCU---UCGGAAGgA-CU-CCGaGC- -5' |
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24432 | 3' | -55.2 | NC_005264.1 | + | 78688 | 0.67 | 0.906323 |
Target: 5'- gCGcGCGCGcuGCgaccaCUUCCcGGGGCUCGc -3' miRNA: 3'- -GCaUGCGCuuCG-----GAAGGaCUCCGAGC- -5' |
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24432 | 3' | -55.2 | NC_005264.1 | + | 79910 | 0.67 | 0.923724 |
Target: 5'- gCGUGCGCGuGGCCgacgUCUGcGGCg-- -3' miRNA: 3'- -GCAUGCGCuUCGGaa--GGACuCCGagc -5' |
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24432 | 3' | -55.2 | NC_005264.1 | + | 93917 | 1.09 | 0.004117 |
Target: 5'- gCGUACGCGAAGCCUUCCUGAGGCUCGu -3' miRNA: 3'- -GCAUGCGCUUCGGAAGGACUCCGAGC- -5' |
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24432 | 3' | -55.2 | NC_005264.1 | + | 95798 | 0.77 | 0.419764 |
Target: 5'- gGUGgGCGGugAGCCUaUCCUGAGGCccUCGa -3' miRNA: 3'- gCAUgCGCU--UCGGA-AGGACUCCG--AGC- -5' |
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24432 | 3' | -55.2 | NC_005264.1 | + | 106619 | 0.67 | 0.912359 |
Target: 5'- gCGUACGUGAAGgaCgguUUCUGGGGCgCGu -3' miRNA: 3'- -GCAUGCGCUUCg-Ga--AGGACUCCGaGC- -5' |
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24432 | 3' | -55.2 | NC_005264.1 | + | 128535 | 0.66 | 0.92905 |
Target: 5'- gCGUcagGCGCGgcGCCcUCgaGGGGCccUCGa -3' miRNA: 3'- -GCA---UGCGCuuCGGaAGgaCUCCG--AGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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