miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24432 5' -53.8 NC_005264.1 + 31457 0.66 0.968184
Target:  5'- -cCGACGAgaGCGUCGccGAUGG-GCg -3'
miRNA:   3'- aaGCUGUUg-CGCAGCuuCUGCCuCGa -5'
24432 5' -53.8 NC_005264.1 + 82365 0.66 0.968184
Target:  5'- --aGGCAgGCGCGUCGAuccggugccGGGCGcaGGGCUa -3'
miRNA:   3'- aagCUGU-UGCGCAGCU---------UCUGC--CUCGA- -5'
24432 5' -53.8 NC_005264.1 + 31047 0.66 0.968184
Target:  5'- gUCGuGCGGCuGCGUUGcGGACGGcaGGCg -3'
miRNA:   3'- aAGC-UGUUG-CGCAGCuUCUGCC--UCGa -5'
24432 5' -53.8 NC_005264.1 + 150484 0.66 0.968184
Target:  5'- -cCGACGAgaGCGUCGccGAUGG-GCg -3'
miRNA:   3'- aaGCUGUUg-CGCAGCuuCUGCCuCGa -5'
24432 5' -53.8 NC_005264.1 + 150074 0.66 0.968184
Target:  5'- gUCGuGCGGCuGCGUUGcGGACGGcaGGCg -3'
miRNA:   3'- aAGC-UGUUG-CGCAGCuUCUGCC--UCGa -5'
24432 5' -53.8 NC_005264.1 + 85476 0.66 0.968184
Target:  5'- --gGGCGACGCGcuaGAcgGGACGGAGa- -3'
miRNA:   3'- aagCUGUUGCGCag-CU--UCUGCCUCga -5'
24432 5' -53.8 NC_005264.1 + 18435 0.66 0.968184
Target:  5'- cUCGcuCGGCGCGgggUCGAAGGacguguaGGAGCa -3'
miRNA:   3'- aAGCu-GUUGCGC---AGCUUCUg------CCUCGa -5'
24432 5' -53.8 NC_005264.1 + 150688 0.66 0.964985
Target:  5'- -gUGACGcgaACGCG-CGAGGcagggcucucgGCGGGGCUg -3'
miRNA:   3'- aaGCUGU---UGCGCaGCUUC-----------UGCCUCGA- -5'
24432 5' -53.8 NC_005264.1 + 126903 0.66 0.964985
Target:  5'- gUCGGCGccccagauGCgGCGUCGGAGGucuccucgcCGGAGUa -3'
miRNA:   3'- aAGCUGU--------UG-CGCAGCUUCU---------GCCUCGa -5'
24432 5' -53.8 NC_005264.1 + 7877 0.66 0.964985
Target:  5'- gUCGGCGccccagauGCgGCGUCGGAGGucuccucgcCGGAGUa -3'
miRNA:   3'- aAGCUGU--------UG-CGCAGCUUCU---------GCCUCGa -5'
24432 5' -53.8 NC_005264.1 + 72430 0.66 0.964985
Target:  5'- -aCGAUgcgAACGCGUCGAAcacguuguaucGGCGG-GCg -3'
miRNA:   3'- aaGCUG---UUGCGCAGCUU-----------CUGCCuCGa -5'
24432 5' -53.8 NC_005264.1 + 111278 0.66 0.961567
Target:  5'- gUCGGCAACgguGCGUaCGA-GAacgaGGGGCUg -3'
miRNA:   3'- aAGCUGUUG---CGCA-GCUuCUg---CCUCGA- -5'
24432 5' -53.8 NC_005264.1 + 143670 0.66 0.961567
Target:  5'- gUUGAU-ACGCGUCGAuGugGGuuccAGCUu -3'
miRNA:   3'- aAGCUGuUGCGCAGCUuCugCC----UCGA- -5'
24432 5' -53.8 NC_005264.1 + 53105 0.66 0.961567
Target:  5'- gUgGACAAgGCGcUCGgcGAgGGGGCc -3'
miRNA:   3'- aAgCUGUUgCGC-AGCuuCUgCCUCGa -5'
24432 5' -53.8 NC_005264.1 + 112661 0.66 0.957925
Target:  5'- -aUGACGACGCGUCaGAAGaagucaccgauGCcGAGCUc -3'
miRNA:   3'- aaGCUGUUGCGCAG-CUUC-----------UGcCUCGA- -5'
24432 5' -53.8 NC_005264.1 + 31534 0.66 0.957925
Target:  5'- --gGAgGGC-CGUUGggGugGGGGCg -3'
miRNA:   3'- aagCUgUUGcGCAGCuuCugCCUCGa -5'
24432 5' -53.8 NC_005264.1 + 150561 0.66 0.957925
Target:  5'- --gGAgGGC-CGUUGggGugGGGGCg -3'
miRNA:   3'- aagCUgUUGcGCAGCuuCugCCUCGa -5'
24432 5' -53.8 NC_005264.1 + 37560 0.66 0.957925
Target:  5'- -gCGACAGCGCGcCGcc-GCGGAGg- -3'
miRNA:   3'- aaGCUGUUGCGCaGCuucUGCCUCga -5'
24432 5' -53.8 NC_005264.1 + 13877 0.66 0.956404
Target:  5'- -aCGACcugcucuACGCGUCGucgccugcaggcGACGGGGCg -3'
miRNA:   3'- aaGCUGu------UGCGCAGCuu----------CUGCCUCGa -5'
24432 5' -53.8 NC_005264.1 + 33638 0.66 0.954053
Target:  5'- -gCGGCGACG-GUUGGucGACGGuGCUa -3'
miRNA:   3'- aaGCUGUUGCgCAGCUu-CUGCCuCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.