miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24432 5' -53.8 NC_005264.1 + 93951 1.06 0.007588
Target:  5'- uUUCGACAACGCGUCGAAGACGGAGCUg -3'
miRNA:   3'- -AAGCUGUUGCGCAGCUUCUGCCUCGA- -5'
24432 5' -53.8 NC_005264.1 + 54575 0.81 0.296534
Target:  5'- cUCGuggggcGCGACGgGUCGGAGAUGGAGCUu -3'
miRNA:   3'- aAGC------UGUUGCgCAGCUUCUGCCUCGA- -5'
24432 5' -53.8 NC_005264.1 + 54252 0.76 0.538964
Target:  5'- -gCGcCAACGUGUCG-AGugGGAGCg -3'
miRNA:   3'- aaGCuGUUGCGCAGCuUCugCCUCGa -5'
24432 5' -53.8 NC_005264.1 + 113148 0.75 0.559203
Target:  5'- gUCGACAACGUGUCuGgcGA-GGAGCUc -3'
miRNA:   3'- aAGCUGUUGCGCAG-CuuCUgCCUCGA- -5'
24432 5' -53.8 NC_005264.1 + 127414 0.74 0.610589
Target:  5'- -aCG-CGGCGCGUUGAAGcugcCGGAGCUg -3'
miRNA:   3'- aaGCuGUUGCGCAGCUUCu---GCCUCGA- -5'
24432 5' -53.8 NC_005264.1 + 8387 0.74 0.610589
Target:  5'- -aCG-CGGCGCGUUGAAGcugcCGGAGCUg -3'
miRNA:   3'- aaGCuGUUGCGCAGCUUCu---GCCUCGA- -5'
24432 5' -53.8 NC_005264.1 + 56313 0.74 0.630274
Target:  5'- -aCGACGAaccgauagccguuCGCGUCGAcguGGCGGAGCc -3'
miRNA:   3'- aaGCUGUU-------------GCGCAGCUu--CUGCCUCGa -5'
24432 5' -53.8 NC_005264.1 + 30893 0.73 0.672694
Target:  5'- aUCGGgGACGCGUCGggGGaGGAcuGCg -3'
miRNA:   3'- aAGCUgUUGCGCAGCuuCUgCCU--CGa -5'
24432 5' -53.8 NC_005264.1 + 149919 0.73 0.672694
Target:  5'- aUCGGgGACGCGUCGggGGaGGAcuGCg -3'
miRNA:   3'- aAGCUgUUGCGCAGCuuCUgCCU--CGa -5'
24432 5' -53.8 NC_005264.1 + 70703 0.73 0.672694
Target:  5'- --gGGCGACaGCG-CGAAGACGGAGaCUg -3'
miRNA:   3'- aagCUGUUG-CGCaGCUUCUGCCUC-GA- -5'
24432 5' -53.8 NC_005264.1 + 125491 0.72 0.73356
Target:  5'- cUCGGCGGCGCGgCGAAcGuCGGGGUg -3'
miRNA:   3'- aAGCUGUUGCGCaGCUU-CuGCCUCGa -5'
24432 5' -53.8 NC_005264.1 + 6464 0.72 0.73356
Target:  5'- cUCGGCGGCGCGgCGAAcGuCGGGGUg -3'
miRNA:   3'- aAGCUGUUGCGCaGCUU-CuGCCUCGa -5'
24432 5' -53.8 NC_005264.1 + 34274 0.72 0.742459
Target:  5'- --gGGCGACGCGUCGAAGAguaaguuCGaGGGCc -3'
miRNA:   3'- aagCUGUUGCGCAGCUUCU-------GC-CUCGa -5'
24432 5' -53.8 NC_005264.1 + 153301 0.72 0.742459
Target:  5'- --gGGCGACGCGUCGAAGAguaaguuCGaGGGCc -3'
miRNA:   3'- aagCUGUUGCGCAGCUUCU-------GC-CUCGa -5'
24432 5' -53.8 NC_005264.1 + 96895 0.72 0.743444
Target:  5'- -aUGGCGGCGCG-CGAGGGCGcGGCa -3'
miRNA:   3'- aaGCUGUUGCGCaGCUUCUGCcUCGa -5'
24432 5' -53.8 NC_005264.1 + 136536 0.72 0.743444
Target:  5'- --aGACGACGCGgaCGAAGACgcgGGAGCc -3'
miRNA:   3'- aagCUGUUGCGCa-GCUUCUG---CCUCGa -5'
24432 5' -53.8 NC_005264.1 + 123880 0.71 0.762902
Target:  5'- -aCGACAagugaACGCGUCGGAGAUcgaGGAGa- -3'
miRNA:   3'- aaGCUGU-----UGCGCAGCUUCUG---CCUCga -5'
24432 5' -53.8 NC_005264.1 + 12361 0.71 0.772457
Target:  5'- aUCGGCGACGCucucGUCgGAGGGCGGucccgucgAGCUa -3'
miRNA:   3'- aAGCUGUUGCG----CAG-CUUCUGCC--------UCGA- -5'
24432 5' -53.8 NC_005264.1 + 131388 0.71 0.772457
Target:  5'- aUCGGCGACGCucucGUCgGAGGGCGGucccgucgAGCUa -3'
miRNA:   3'- aAGCUGUUGCG----CAG-CUUCUGCC--------UCGA- -5'
24432 5' -53.8 NC_005264.1 + 91870 0.71 0.809302
Target:  5'- -gCGACAAUG-GUCGAGGuaGCGGGGUg -3'
miRNA:   3'- aaGCUGUUGCgCAGCUUC--UGCCUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.