miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24432 5' -53.8 NC_005264.1 + 123378 0.67 0.945604
Target:  5'- aUCGGCAACcUGUUGGAGGCGuGGuGCg -3'
miRNA:   3'- aAGCUGUUGcGCAGCUUCUGC-CU-CGa -5'
24432 5' -53.8 NC_005264.1 + 20129 0.67 0.945604
Target:  5'- gUCGACGAUGCGggcaGgcGAUGGcGCg -3'
miRNA:   3'- aAGCUGUUGCGCag--CuuCUGCCuCGa -5'
24432 5' -53.8 NC_005264.1 + 147147 0.67 0.94102
Target:  5'- cUCGACGGCGUucuGUgCGAGGAgcauuuUGGGGCa -3'
miRNA:   3'- aAGCUGUUGCG---CA-GCUUCU------GCCUCGa -5'
24432 5' -53.8 NC_005264.1 + 8781 0.67 0.94102
Target:  5'- -aCGGCGG-GCGUCGGccaGGACGGccAGCg -3'
miRNA:   3'- aaGCUGUUgCGCAGCU---UCUGCC--UCGa -5'
24432 5' -53.8 NC_005264.1 + 6435 0.67 0.94102
Target:  5'- cUCG-CGGCgGCGUCGcuGGCGGAGa- -3'
miRNA:   3'- aAGCuGUUG-CGCAGCuuCUGCCUCga -5'
24432 5' -53.8 NC_005264.1 + 125462 0.67 0.94102
Target:  5'- cUCG-CGGCgGCGUCGcuGGCGGAGa- -3'
miRNA:   3'- aAGCuGUUG-CGCAGCuuCUGCCUCga -5'
24432 5' -53.8 NC_005264.1 + 127807 0.67 0.94102
Target:  5'- -aCGGCGG-GCGUCGGccaGGACGGccAGCg -3'
miRNA:   3'- aaGCUGUUgCGCAGCU---UCUGCC--UCGa -5'
24432 5' -53.8 NC_005264.1 + 116978 0.67 0.930603
Target:  5'- aUUGGCGGCGCGcagacucgaagucUUGggGGCGGucuGCg -3'
miRNA:   3'- aAGCUGUUGCGC-------------AGCuuCUGCCu--CGa -5'
24432 5' -53.8 NC_005264.1 + 146587 0.67 0.929554
Target:  5'- --aGGCGAUGUGUCGGuacucucagaacugGGAgGGGGCUc -3'
miRNA:   3'- aagCUGUUGCGCAGCU--------------UCUgCCUCGA- -5'
24432 5' -53.8 NC_005264.1 + 158943 0.68 0.924715
Target:  5'- -gCGAcCAAUGCGgcguaaacgacgCGAAGACGGAGaCg -3'
miRNA:   3'- aaGCU-GUUGCGCa-----------GCUUCUGCCUC-Ga -5'
24432 5' -53.8 NC_005264.1 + 42959 0.68 0.920247
Target:  5'- -gCGGCAACGCcUCGGAGGgGGAaagGCc -3'
miRNA:   3'- aaGCUGUUGCGcAGCUUCUgCCU---CGa -5'
24432 5' -53.8 NC_005264.1 + 161986 0.68 0.920247
Target:  5'- -gCGGCAACGCcUCGGAGGgGGAaagGCc -3'
miRNA:   3'- aaGCUGUUGCGcAGCUUCUgCCU---CGa -5'
24432 5' -53.8 NC_005264.1 + 156591 0.68 0.920247
Target:  5'- -gCGACGAcCGCGaCGGAGGCGGcaagucucgcGGCg -3'
miRNA:   3'- aaGCUGUU-GCGCaGCUUCUGCC----------UCGa -5'
24432 5' -53.8 NC_005264.1 + 37564 0.68 0.920247
Target:  5'- -gCGACGAcCGCGaCGGAGGCGGcaagucucgcGGCg -3'
miRNA:   3'- aaGCUGUU-GCGCaGCUUCUGCC----------UCGa -5'
24432 5' -53.8 NC_005264.1 + 39805 0.68 0.913847
Target:  5'- gUUGGCGAUGCG-CGGcacgcauccgccuAGAUGGAGCc -3'
miRNA:   3'- aAGCUGUUGCGCaGCU-------------UCUGCCUCGa -5'
24432 5' -53.8 NC_005264.1 + 158416 0.68 0.908392
Target:  5'- -aCGAUGACGaCGUCGgcGAagGGGGCa -3'
miRNA:   3'- aaGCUGUUGC-GCAGCuuCUg-CCUCGa -5'
24432 5' -53.8 NC_005264.1 + 39389 0.68 0.908392
Target:  5'- -aCGAUGACGaCGUCGgcGAagGGGGCa -3'
miRNA:   3'- aaGCUGUUGC-GCAGCuuCUg-CCUCGa -5'
24432 5' -53.8 NC_005264.1 + 144338 0.68 0.907773
Target:  5'- aUCGGCAAgGCGUuuucgcCGAaucuacuGGGCGGAGUc -3'
miRNA:   3'- aAGCUGUUgCGCA------GCU-------UCUGCCUCGa -5'
24432 5' -53.8 NC_005264.1 + 35006 0.68 0.902101
Target:  5'- -gCGAgCGGCGC-UCGAAGA-GGAGCg -3'
miRNA:   3'- aaGCU-GUUGCGcAGCUUCUgCCUCGa -5'
24432 5' -53.8 NC_005264.1 + 154033 0.68 0.902101
Target:  5'- -gCGAgCGGCGC-UCGAAGA-GGAGCg -3'
miRNA:   3'- aaGCU-GUUGCGcAGCUUCUgCCUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.