miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24432 5' -53.8 NC_005264.1 + 6435 0.67 0.94102
Target:  5'- cUCG-CGGCgGCGUCGcuGGCGGAGa- -3'
miRNA:   3'- aAGCuGUUG-CGCAGCuuCUGCCUCga -5'
24432 5' -53.8 NC_005264.1 + 6464 0.72 0.73356
Target:  5'- cUCGGCGGCGCGgCGAAcGuCGGGGUg -3'
miRNA:   3'- aAGCUGUUGCGCaGCUU-CuGCCUCGa -5'
24432 5' -53.8 NC_005264.1 + 7877 0.66 0.964985
Target:  5'- gUCGGCGccccagauGCgGCGUCGGAGGucuccucgcCGGAGUa -3'
miRNA:   3'- aAGCUGU--------UG-CGCAGCUUCU---------GCCUCGa -5'
24432 5' -53.8 NC_005264.1 + 8387 0.74 0.610589
Target:  5'- -aCG-CGGCGCGUUGAAGcugcCGGAGCUg -3'
miRNA:   3'- aaGCuGUUGCGCAGCUUCu---GCCUCGA- -5'
24432 5' -53.8 NC_005264.1 + 8781 0.67 0.94102
Target:  5'- -aCGGCGG-GCGUCGGccaGGACGGccAGCg -3'
miRNA:   3'- aaGCUGUUgCGCAGCU---UCUGCC--UCGa -5'
24432 5' -53.8 NC_005264.1 + 12361 0.71 0.772457
Target:  5'- aUCGGCGACGCucucGUCgGAGGGCGGucccgucgAGCUa -3'
miRNA:   3'- aAGCUGUUGCG----CAG-CUUCUGCC--------UCGA- -5'
24432 5' -53.8 NC_005264.1 + 13877 0.66 0.956404
Target:  5'- -aCGACcugcucuACGCGUCGucgccugcaggcGACGGGGCg -3'
miRNA:   3'- aaGCUGu------UGCGCAGCuu----------CUGCCUCGa -5'
24432 5' -53.8 NC_005264.1 + 18435 0.66 0.968184
Target:  5'- cUCGcuCGGCGCGgggUCGAAGGacguguaGGAGCa -3'
miRNA:   3'- aAGCu-GUUGCGC---AGCUUCUg------CCUCGa -5'
24432 5' -53.8 NC_005264.1 + 19109 0.7 0.82677
Target:  5'- -gCGGCGGCGCGgagaCGAGcacuacGAUGGGGCUa -3'
miRNA:   3'- aaGCUGUUGCGCa---GCUU------CUGCCUCGA- -5'
24432 5' -53.8 NC_005264.1 + 20129 0.67 0.945604
Target:  5'- gUCGACGAUGCGggcaGgcGAUGGcGCg -3'
miRNA:   3'- aAGCUGUUGCGCag--CuuCUGCCuCGa -5'
24432 5' -53.8 NC_005264.1 + 30893 0.73 0.672694
Target:  5'- aUCGGgGACGCGUCGggGGaGGAcuGCg -3'
miRNA:   3'- aAGCUgUUGCGCAGCuuCUgCCU--CGa -5'
24432 5' -53.8 NC_005264.1 + 31047 0.66 0.968184
Target:  5'- gUCGuGCGGCuGCGUUGcGGACGGcaGGCg -3'
miRNA:   3'- aAGC-UGUUG-CGCAGCuUCUGCC--UCGa -5'
24432 5' -53.8 NC_005264.1 + 31457 0.66 0.968184
Target:  5'- -cCGACGAgaGCGUCGccGAUGG-GCg -3'
miRNA:   3'- aaGCUGUUg-CGCAGCuuCUGCCuCGa -5'
24432 5' -53.8 NC_005264.1 + 31534 0.66 0.957925
Target:  5'- --gGAgGGC-CGUUGggGugGGGGCg -3'
miRNA:   3'- aagCUgUUGcGCAGCuuCugCCUCGa -5'
24432 5' -53.8 NC_005264.1 + 33638 0.66 0.954053
Target:  5'- -gCGGCGACG-GUUGGucGACGGuGCUa -3'
miRNA:   3'- aaGCUGUUGCgCAGCUu-CUGCCuCGA- -5'
24432 5' -53.8 NC_005264.1 + 34274 0.72 0.742459
Target:  5'- --gGGCGACGCGUCGAAGAguaaguuCGaGGGCc -3'
miRNA:   3'- aagCUGUUGCGCAGCUUCU-------GC-CUCGa -5'
24432 5' -53.8 NC_005264.1 + 35006 0.68 0.902101
Target:  5'- -gCGAgCGGCGC-UCGAAGA-GGAGCg -3'
miRNA:   3'- aaGCU-GUUGCGcAGCUUCUgCCUCGa -5'
24432 5' -53.8 NC_005264.1 + 37560 0.66 0.957925
Target:  5'- -gCGACAGCGCGcCGcc-GCGGAGg- -3'
miRNA:   3'- aaGCUGUUGCGCaGCuucUGCCUCga -5'
24432 5' -53.8 NC_005264.1 + 37564 0.68 0.920247
Target:  5'- -gCGACGAcCGCGaCGGAGGCGGcaagucucgcGGCg -3'
miRNA:   3'- aaGCUGUU-GCGCaGCUUCUGCC----------UCGa -5'
24432 5' -53.8 NC_005264.1 + 39389 0.68 0.908392
Target:  5'- -aCGAUGACGaCGUCGgcGAagGGGGCa -3'
miRNA:   3'- aaGCUGUUGC-GCAGCuuCUg-CCUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.