miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24432 5' -53.8 NC_005264.1 + 33638 0.66 0.954053
Target:  5'- -gCGGCGACG-GUUGGucGACGGuGCUa -3'
miRNA:   3'- aaGCUGUUGCgCAGCUu-CUGCCuCGA- -5'
24432 5' -53.8 NC_005264.1 + 154033 0.68 0.902101
Target:  5'- -gCGAgCGGCGC-UCGAAGA-GGAGCg -3'
miRNA:   3'- aaGCU-GUUGCGcAGCUUCUgCCUCGa -5'
24432 5' -53.8 NC_005264.1 + 158416 0.68 0.908392
Target:  5'- -aCGAUGACGaCGUCGgcGAagGGGGCa -3'
miRNA:   3'- aaGCUGUUGC-GCAGCuuCUg-CCUCGa -5'
24432 5' -53.8 NC_005264.1 + 39805 0.68 0.913847
Target:  5'- gUUGGCGAUGCG-CGGcacgcauccgccuAGAUGGAGCc -3'
miRNA:   3'- aAGCUGUUGCGCaGCU-------------UCUGCCUCGa -5'
24432 5' -53.8 NC_005264.1 + 156591 0.68 0.920247
Target:  5'- -gCGACGAcCGCGaCGGAGGCGGcaagucucgcGGCg -3'
miRNA:   3'- aaGCUGUU-GCGCaGCUUCUGCC----------UCGa -5'
24432 5' -53.8 NC_005264.1 + 161986 0.68 0.920247
Target:  5'- -gCGGCAACGCcUCGGAGGgGGAaagGCc -3'
miRNA:   3'- aaGCUGUUGCGcAGCUUCUgCCU---CGa -5'
24432 5' -53.8 NC_005264.1 + 116978 0.67 0.930603
Target:  5'- aUUGGCGGCGCGcagacucgaagucUUGggGGCGGucuGCg -3'
miRNA:   3'- aAGCUGUUGCGC-------------AGCuuCUGCCu--CGa -5'
24432 5' -53.8 NC_005264.1 + 127807 0.67 0.94102
Target:  5'- -aCGGCGG-GCGUCGGccaGGACGGccAGCg -3'
miRNA:   3'- aaGCUGUUgCGCAGCU---UCUGCC--UCGa -5'
24432 5' -53.8 NC_005264.1 + 125462 0.67 0.94102
Target:  5'- cUCG-CGGCgGCGUCGcuGGCGGAGa- -3'
miRNA:   3'- aAGCuGUUG-CGCAGCuuCUGCCUCga -5'
24432 5' -53.8 NC_005264.1 + 144996 0.69 0.859468
Target:  5'- gUCGaACAGCGCG-CGcGAGAUGGAGg- -3'
miRNA:   3'- aAGC-UGUUGCGCaGC-UUCUGCCUCga -5'
24432 5' -53.8 NC_005264.1 + 160596 0.69 0.859468
Target:  5'- uUUCGGCAaguguuccGCGCGUCGu-GGgGGAGUg -3'
miRNA:   3'- -AAGCUGU--------UGCGCAGCuuCUgCCUCGa -5'
24432 5' -53.8 NC_005264.1 + 19109 0.7 0.82677
Target:  5'- -gCGGCGGCGCGgagaCGAGcacuacGAUGGGGCUa -3'
miRNA:   3'- aaGCUGUUGCGCa---GCUU------CUGCCUCGA- -5'
24432 5' -53.8 NC_005264.1 + 127414 0.74 0.610589
Target:  5'- -aCG-CGGCGCGUUGAAGcugcCGGAGCUg -3'
miRNA:   3'- aaGCuGUUGCGCAGCUUCu---GCCUCGA- -5'
24432 5' -53.8 NC_005264.1 + 70703 0.73 0.672694
Target:  5'- --gGGCGACaGCG-CGAAGACGGAGaCUg -3'
miRNA:   3'- aagCUGUUG-CGCaGCUUCUGCCUC-GA- -5'
24432 5' -53.8 NC_005264.1 + 149919 0.73 0.672694
Target:  5'- aUCGGgGACGCGUCGggGGaGGAcuGCg -3'
miRNA:   3'- aAGCUgUUGCGCAGCuuCUgCCU--CGa -5'
24432 5' -53.8 NC_005264.1 + 125491 0.72 0.73356
Target:  5'- cUCGGCGGCGCGgCGAAcGuCGGGGUg -3'
miRNA:   3'- aAGCUGUUGCGCaGCUU-CuGCCUCGa -5'
24432 5' -53.8 NC_005264.1 + 153301 0.72 0.742459
Target:  5'- --gGGCGACGCGUCGAAGAguaaguuCGaGGGCc -3'
miRNA:   3'- aagCUGUUGCGCAGCUUCU-------GC-CUCGa -5'
24432 5' -53.8 NC_005264.1 + 136536 0.72 0.743444
Target:  5'- --aGACGACGCGgaCGAAGACgcgGGAGCc -3'
miRNA:   3'- aagCUGUUGCGCa-GCUUCUG---CCUCGa -5'
24432 5' -53.8 NC_005264.1 + 131388 0.71 0.772457
Target:  5'- aUCGGCGACGCucucGUCgGAGGGCGGucccgucgAGCUa -3'
miRNA:   3'- aAGCUGUUGCG----CAG-CUUCUGCC--------UCGA- -5'
24432 5' -53.8 NC_005264.1 + 91870 0.71 0.809302
Target:  5'- -gCGACAAUG-GUCGAGGuaGCGGGGUg -3'
miRNA:   3'- aaGCUGUUGCgCAGCUUC--UGCCUCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.