miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24433 3' -54.2 NC_005264.1 + 73789 0.66 0.954214
Target:  5'- gGC-CUcUUGgaagaUGGCGCAGG-GGUCGg -3'
miRNA:   3'- aUGcGAaAAC-----ACCGCGUCCaCCAGCg -5'
24433 3' -54.2 NC_005264.1 + 54314 0.66 0.950099
Target:  5'- gACGCag-UGUGccaCGguGGUGG-CGCa -3'
miRNA:   3'- aUGCGaaaACACc--GCguCCACCaGCG- -5'
24433 3' -54.2 NC_005264.1 + 27930 0.66 0.945745
Target:  5'- -cCGCgg-UGuUGGCGUucugcgcgucGGUGGUCGUg -3'
miRNA:   3'- auGCGaaaAC-ACCGCGu---------CCACCAGCG- -5'
24433 3' -54.2 NC_005264.1 + 19426 0.66 0.941149
Target:  5'- gGCGCcgggUGUGGcCGCGGGgcgcgGGUgGg -3'
miRNA:   3'- aUGCGaaa-ACACC-GCGUCCa----CCAgCg -5'
24433 3' -54.2 NC_005264.1 + 46257 0.66 0.941149
Target:  5'- cGCGCc--UGggGGCGUuuAGG-GGUCGCc -3'
miRNA:   3'- aUGCGaaaACa-CCGCG--UCCaCCAGCG- -5'
24433 3' -54.2 NC_005264.1 + 55429 0.67 0.920304
Target:  5'- aUGCGCgcggUUUccuUGGCuuGGGUGGUCGa -3'
miRNA:   3'- -AUGCGa---AAAc--ACCGcgUCCACCAGCg -5'
24433 3' -54.2 NC_005264.1 + 60962 0.68 0.902082
Target:  5'- -gUGUUcgUGUGGUu--GGUGGUCGCg -3'
miRNA:   3'- auGCGAaaACACCGcguCCACCAGCG- -5'
24433 3' -54.2 NC_005264.1 + 7420 0.68 0.895522
Target:  5'- aUugGUUc--GUGcGC-CGGGUGGUCGCu -3'
miRNA:   3'- -AugCGAaaaCAC-CGcGUCCACCAGCG- -5'
24433 3' -54.2 NC_005264.1 + 32908 0.68 0.887336
Target:  5'- aUGCGUUcucgaucGCGCAGG-GGUCGCg -3'
miRNA:   3'- -AUGCGAaaacac-CGCGUCCaCCAGCG- -5'
24433 3' -54.2 NC_005264.1 + 157057 0.69 0.866946
Target:  5'- gGCGCcucgGUGGUGCAcgacGGUCGCg -3'
miRNA:   3'- aUGCGaaaaCACCGCGUcca-CCAGCG- -5'
24433 3' -54.2 NC_005264.1 + 38030 0.69 0.866946
Target:  5'- gGCGCcucgGUGGUGCAcgacGGUCGCg -3'
miRNA:   3'- aUGCGaaaaCACCGCGUcca-CCAGCG- -5'
24433 3' -54.2 NC_005264.1 + 110136 0.69 0.859242
Target:  5'- cGCGCUUUUG-GGgGCGGGcGG-CGa -3'
miRNA:   3'- aUGCGAAAACaCCgCGUCCaCCaGCg -5'
24433 3' -54.2 NC_005264.1 + 93608 0.69 0.859242
Target:  5'- aACGCUc---UGGCGCAGcUGGcCGCu -3'
miRNA:   3'- aUGCGAaaacACCGCGUCcACCaGCG- -5'
24433 3' -54.2 NC_005264.1 + 154534 0.69 0.859242
Target:  5'- gACGCc---GcGGCGCAGGUGcccccGUCGCc -3'
miRNA:   3'- aUGCGaaaaCaCCGCGUCCAC-----CAGCG- -5'
24433 3' -54.2 NC_005264.1 + 35507 0.69 0.859242
Target:  5'- gACGCc---GcGGCGCAGGUGcccccGUCGCc -3'
miRNA:   3'- aUGCGaaaaCaCCGCGUCCAC-----CAGCG- -5'
24433 3' -54.2 NC_005264.1 + 52213 0.69 0.834884
Target:  5'- gGCGCg---GUGGCGCgAGcUGGUaCGCc -3'
miRNA:   3'- aUGCGaaaaCACCGCG-UCcACCA-GCG- -5'
24433 3' -54.2 NC_005264.1 + 58756 0.69 0.826372
Target:  5'- cUGCGCUaucagaGGCGCAcgcgcGGUGGUCGg -3'
miRNA:   3'- -AUGCGAaaaca-CCGCGU-----CCACCAGCg -5'
24433 3' -54.2 NC_005264.1 + 130256 0.7 0.790585
Target:  5'- aAC-CUUUUG-GGCGCGGGUGcgcgacGUUGCg -3'
miRNA:   3'- aUGcGAAAACaCCGCGUCCAC------CAGCG- -5'
24433 3' -54.2 NC_005264.1 + 20237 0.71 0.742601
Target:  5'- cGCGCgugacggGUGG-GCAGG-GGUUGCg -3'
miRNA:   3'- aUGCGaaaa---CACCgCGUCCaCCAGCG- -5'
24433 3' -54.2 NC_005264.1 + 1115 0.72 0.685952
Target:  5'- -cUGCUUUa-UGGCGCGGGUcguugugcaugcgggGGUCGCg -3'
miRNA:   3'- auGCGAAAacACCGCGUCCA---------------CCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.