miRNA display CGI


Results 1 - 20 of 410 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24433 5' -55.4 NC_005264.1 + 119383 0.66 0.940815
Target:  5'- -cGCGCGAagaucaaacacaACGCGCUuauggugcuguacuuGCAcucgcggcuGGCGGGCg -3'
miRNA:   3'- uaUGCGCUg-----------UGCGCGG---------------UGU---------UUGCCCG- -5'
24433 5' -55.4 NC_005264.1 + 5201 0.66 0.939878
Target:  5'- --uCGUGuCuCGCGCCGCG-GCGaGGCg -3'
miRNA:   3'- uauGCGCuGuGCGCGGUGUuUGC-CCG- -5'
24433 5' -55.4 NC_005264.1 + 87508 0.66 0.939878
Target:  5'- cUACGCGcuguuaccggcACugGCGCGCgGCAGAugcugcagcgUGGGCg -3'
miRNA:   3'- uAUGCGC-----------UG--UGCGCGgUGUUU----------GCCCG- -5'
24433 5' -55.4 NC_005264.1 + 19873 0.66 0.939878
Target:  5'- uUGCGCGGCcuuAUGCaCCGCAAGuauuCGcGGCg -3'
miRNA:   3'- uAUGCGCUG---UGCGcGGUGUUU----GC-CCG- -5'
24433 5' -55.4 NC_005264.1 + 159512 0.66 0.939878
Target:  5'- -gGCGCGACuacucuCGCuCCGCuugcACGGcGCg -3'
miRNA:   3'- uaUGCGCUGu-----GCGcGGUGuu--UGCC-CG- -5'
24433 5' -55.4 NC_005264.1 + 127014 0.66 0.939878
Target:  5'- --cCGUG-CACGgGCCGCcauuGCGGGg -3'
miRNA:   3'- uauGCGCuGUGCgCGGUGuu--UGCCCg -5'
24433 5' -55.4 NC_005264.1 + 70537 0.66 0.939878
Target:  5'- -gGCGCGuauacagaaaacACACGcCGCCAC---UGGGUg -3'
miRNA:   3'- uaUGCGC------------UGUGC-GCGGUGuuuGCCCG- -5'
24433 5' -55.4 NC_005264.1 + 108512 0.66 0.939878
Target:  5'- gGUACgGCGuCGUGCGCCACcacCGuGGCa -3'
miRNA:   3'- -UAUG-CGCuGUGCGCGGUGuuuGC-CCG- -5'
24433 5' -55.4 NC_005264.1 + 1178 0.66 0.939878
Target:  5'- -cGCGCGAUggGgGUacgcaGCGGAcCGGGCg -3'
miRNA:   3'- uaUGCGCUGugCgCGg----UGUUU-GCCCG- -5'
24433 5' -55.4 NC_005264.1 + 108226 0.66 0.939878
Target:  5'- -aACGUGgccgaugucccGCACGCGCCG-AGGCcGGCg -3'
miRNA:   3'- uaUGCGC-----------UGUGCGCGGUgUUUGcCCG- -5'
24433 5' -55.4 NC_005264.1 + 7987 0.66 0.939878
Target:  5'- --cCGUG-CACGgGCCGCcauuGCGGGg -3'
miRNA:   3'- uauGCGCuGUGCgCGGUGuu--UGCCCg -5'
24433 5' -55.4 NC_005264.1 + 128579 0.66 0.939878
Target:  5'- -gACGCGucgccCGCGCcucGCUACAGAagcCGGGUu -3'
miRNA:   3'- uaUGCGCu----GUGCG---CGGUGUUU---GCCCG- -5'
24433 5' -55.4 NC_005264.1 + 91559 0.66 0.939878
Target:  5'- -gGCGCGGCGgGgGgCACGAggcuugucGCGGaGCu -3'
miRNA:   3'- uaUGCGCUGUgCgCgGUGUU--------UGCC-CG- -5'
24433 5' -55.4 NC_005264.1 + 134436 0.66 0.939878
Target:  5'- --cCGCGACACGCauacCCACGcccaggaucggcAugGGGg -3'
miRNA:   3'- uauGCGCUGUGCGc---GGUGU------------UugCCCg -5'
24433 5' -55.4 NC_005264.1 + 124228 0.66 0.939878
Target:  5'- --uCGUGuCuCGCGCCGCG-GCGaGGCg -3'
miRNA:   3'- uauGCGCuGuGCGCGGUGUuUGC-CCG- -5'
24433 5' -55.4 NC_005264.1 + 112595 0.66 0.939878
Target:  5'- --cCGCGGCAgGUG-CACAAACuGGGa -3'
miRNA:   3'- uauGCGCUGUgCGCgGUGUUUG-CCCg -5'
24433 5' -55.4 NC_005264.1 + 49474 0.66 0.939878
Target:  5'- ----cUGACcCGCGCCGUAuucGACGGGCa -3'
miRNA:   3'- uaugcGCUGuGCGCGGUGU---UUGCCCG- -5'
24433 5' -55.4 NC_005264.1 + 120205 0.66 0.939878
Target:  5'- -cGCGCGAUggGgGUacgcaGCGGAcCGGGCg -3'
miRNA:   3'- uaUGCGCUGugCgCGg----UGUUU-GCCCG- -5'
24433 5' -55.4 NC_005264.1 + 9552 0.66 0.939878
Target:  5'- -gACGCGucgccCGCGCcucGCUACAGAagcCGGGUu -3'
miRNA:   3'- uaUGCGCu----GUGCG---CGGUGUUU---GCCCG- -5'
24433 5' -55.4 NC_005264.1 + 123478 0.66 0.939878
Target:  5'- uGUACG-GGCAUGCggugGCCGCGcgguuGCuGGGCg -3'
miRNA:   3'- -UAUGCgCUGUGCG----CGGUGUu----UG-CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.