miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24436 3' -55.7 NC_005264.1 + 68150 0.66 0.931672
Target:  5'- --cCACGGccguuaUGUgaaCGUUGcGGCGCCCg -3'
miRNA:   3'- uuuGUGCC------ACAaacGCAGC-CCGCGGG- -5'
24436 3' -55.7 NC_005264.1 + 101358 0.66 0.921001
Target:  5'- --cCGCGG-Ggc-GCGUCGGcGCGCUa -3'
miRNA:   3'- uuuGUGCCaCaaaCGCAGCC-CGCGGg -5'
24436 3' -55.7 NC_005264.1 + 72445 0.66 0.921001
Target:  5'- cGAACACGuUGUau-CGgCGGGCGCCg -3'
miRNA:   3'- -UUUGUGCcACAaacGCaGCCCGCGGg -5'
24436 3' -55.7 NC_005264.1 + 24469 0.66 0.915308
Target:  5'- cGAACAucguCGGcGUgacgUUGCGauagucgcguUCGGGCGCCUu -3'
miRNA:   3'- -UUUGU----GCCaCA----AACGC----------AGCCCGCGGG- -5'
24436 3' -55.7 NC_005264.1 + 66323 0.66 0.909377
Target:  5'- -uGCGCGGcgucgugcaUGUUUGCGuUCGcagcuucggaGGCGCUCu -3'
miRNA:   3'- uuUGUGCC---------ACAAACGC-AGC----------CCGCGGG- -5'
24436 3' -55.7 NC_005264.1 + 46858 0.66 0.908771
Target:  5'- -cACACGGccug-GCGuucagcgucccugUCGGGCGCCg -3'
miRNA:   3'- uuUGUGCCacaaaCGC-------------AGCCCGCGGg -5'
24436 3' -55.7 NC_005264.1 + 131330 0.66 0.90321
Target:  5'- cGAUAUgGGUGUgugaagcGCGUUGGgaacGCGCCCa -3'
miRNA:   3'- uUUGUG-CCACAaa-----CGCAGCC----CGCGGG- -5'
24436 3' -55.7 NC_005264.1 + 63846 0.67 0.890182
Target:  5'- cGGCGCGGUcGUUU-CGUCaGGcCGCUCa -3'
miRNA:   3'- uUUGUGCCA-CAAAcGCAGcCC-GCGGG- -5'
24436 3' -55.7 NC_005264.1 + 88119 0.67 0.890182
Target:  5'- cGGCGCGGU---UGCGUaCGGGCugaugGCCg -3'
miRNA:   3'- uUUGUGCCAcaaACGCA-GCCCG-----CGGg -5'
24436 3' -55.7 NC_005264.1 + 93531 0.67 0.883325
Target:  5'- -uACGCGGaGUUcUGCGUUuuaGCGCCCa -3'
miRNA:   3'- uuUGUGCCaCAA-ACGCAGcc-CGCGGG- -5'
24436 3' -55.7 NC_005264.1 + 16559 0.67 0.876247
Target:  5'- cAGCGCGGUGggcgGCGcCGgGGCGgCg -3'
miRNA:   3'- uUUGUGCCACaaa-CGCaGC-CCGCgGg -5'
24436 3' -55.7 NC_005264.1 + 148315 0.68 0.86447
Target:  5'- -cGCGcCGGUGUucguauggucugaggUUGCGUgCGcGGuCGCCCu -3'
miRNA:   3'- uuUGU-GCCACA---------------AACGCA-GC-CC-GCGGG- -5'
24436 3' -55.7 NC_005264.1 + 62464 0.68 0.837701
Target:  5'- aGAACAagaauCGGUGUUgcGCGUCGuGCGCgCg -3'
miRNA:   3'- -UUUGU-----GCCACAAa-CGCAGCcCGCGgG- -5'
24436 3' -55.7 NC_005264.1 + 31715 0.69 0.812284
Target:  5'- -cGCGCGGggcguacuUGUUcGCGUCguguaagagcagGGGCGCCUu -3'
miRNA:   3'- uuUGUGCC--------ACAAaCGCAG------------CCCGCGGG- -5'
24436 3' -55.7 NC_005264.1 + 150741 0.69 0.812284
Target:  5'- -cGCGCGGggcguacuUGUUcGCGUCguguaagagcagGGGCGCCUu -3'
miRNA:   3'- uuUGUGCC--------ACAAaCGCAG------------CCCGCGGG- -5'
24436 3' -55.7 NC_005264.1 + 83103 0.69 0.79451
Target:  5'- uAGCGCaGGUGUacGcCGaCGGGCGCCa -3'
miRNA:   3'- uUUGUG-CCACAaaC-GCaGCCCGCGGg -5'
24436 3' -55.7 NC_005264.1 + 159364 0.7 0.757277
Target:  5'- cGACGCGugccacaucGUGgaUGCGgcacCGGGCGCCa -3'
miRNA:   3'- uUUGUGC---------CACaaACGCa---GCCCGCGGg -5'
24436 3' -55.7 NC_005264.1 + 8317 0.7 0.757277
Target:  5'- cGGCACGcuUGUUUGCGcgCGGcauguGCGCCCc -3'
miRNA:   3'- uUUGUGCc-ACAAACGCa-GCC-----CGCGGG- -5'
24436 3' -55.7 NC_005264.1 + 48372 0.7 0.728161
Target:  5'- -uGCGCaGUGcc-GCGUCGaGGCGCUCg -3'
miRNA:   3'- uuUGUGcCACaaaCGCAGC-CCGCGGG- -5'
24436 3' -55.7 NC_005264.1 + 142856 0.72 0.627091
Target:  5'- cGAGCGCGGUcGguuugUUGCGUCGacucGCGCCg -3'
miRNA:   3'- -UUUGUGCCA-Ca----AACGCAGCc---CGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.