miRNA display CGI


Results 1 - 20 of 238 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24436 5' -59.4 NC_005264.1 + 150718 0.65 0.829049
Target:  5'- gCGGGGCugcCCGCCaaaggucGCgCGCGGGgcguacuuguuCGCGUCg -3'
miRNA:   3'- -GCCUUGu--GGCGG-------CG-GCGCUU-----------GCGCAG- -5'
24436 5' -59.4 NC_005264.1 + 31692 0.65 0.829049
Target:  5'- gCGGGGCugcCCGCCaaaggucGCgCGCGGGgcguacuuguuCGCGUCg -3'
miRNA:   3'- -GCCUUGu--GGCGG-------CG-GCGCUU-----------GCGCAG- -5'
24436 5' -59.4 NC_005264.1 + 92078 0.65 0.826613
Target:  5'- aGGAuuCACCGCguuguUGCCGCuugcucgccuguACGCGUCu -3'
miRNA:   3'- gCCUu-GUGGCG-----GCGGCGcu----------UGCGCAG- -5'
24436 5' -59.4 NC_005264.1 + 59752 0.66 0.821697
Target:  5'- uGGGGCgGCgGCUGCgaCGCGGACGCu-- -3'
miRNA:   3'- gCCUUG-UGgCGGCG--GCGCUUGCGcag -5'
24436 5' -59.4 NC_005264.1 + 125650 0.66 0.821697
Target:  5'- uGGAGCGgCGCCGUaa--AAUGCGUCu -3'
miRNA:   3'- gCCUUGUgGCGGCGgcgcUUGCGCAG- -5'
24436 5' -59.4 NC_005264.1 + 46605 0.66 0.821697
Target:  5'- gCGGAGCucCCGgcaCCGUCGUGGGacCGCGUg -3'
miRNA:   3'- -GCCUUGu-GGC---GGCGGCGCUU--GCGCAg -5'
24436 5' -59.4 NC_005264.1 + 23544 0.66 0.821697
Target:  5'- gCGGAACGCuacgCGCUaCCGCGGAUGgGa- -3'
miRNA:   3'- -GCCUUGUG----GCGGcGGCGCUUGCgCag -5'
24436 5' -59.4 NC_005264.1 + 31444 0.66 0.821697
Target:  5'- aCGGG--ACCGCCcuCCGaCGAGaGCGUCg -3'
miRNA:   3'- -GCCUugUGGCGGc-GGC-GCUUgCGCAG- -5'
24436 5' -59.4 NC_005264.1 + 150471 0.66 0.821697
Target:  5'- aCGGG--ACCGCCcuCCGaCGAGaGCGUCg -3'
miRNA:   3'- -GCCUugUGGCGGc-GGC-GCUUgCGCAG- -5'
24436 5' -59.4 NC_005264.1 + 162195 0.66 0.819218
Target:  5'- gGGGGCGCgugagccucuaucgCGCUGCCuGCG-ACGCGg- -3'
miRNA:   3'- gCCUUGUG--------------GCGGCGG-CGCuUGCGCag -5'
24436 5' -59.4 NC_005264.1 + 43168 0.66 0.819218
Target:  5'- gGGGGCGCgugagccucuaucgCGCUGCCuGCG-ACGCGg- -3'
miRNA:   3'- gCCUUGUG--------------GCGGCGG-CGCuUGCGCag -5'
24436 5' -59.4 NC_005264.1 + 51925 0.66 0.818388
Target:  5'- cCGGucguccGCGCCGagcuuggcgagggUGCCGCuAACGCGUCg -3'
miRNA:   3'- -GCCu-----UGUGGCg------------GCGGCGcUUGCGCAG- -5'
24436 5' -59.4 NC_005264.1 + 68262 0.66 0.813377
Target:  5'- gCGGGcgGCcuGCUGCUGCCGCcucuuUGCGUCc -3'
miRNA:   3'- -GCCU--UG--UGGCGGCGGCGcuu--GCGCAG- -5'
24436 5' -59.4 NC_005264.1 + 33247 0.66 0.813377
Target:  5'- aGGAACGaggaaGCaGCgGCGAACGCG-Cg -3'
miRNA:   3'- gCCUUGUgg---CGgCGgCGCUUGCGCaG- -5'
24436 5' -59.4 NC_005264.1 + 98309 0.66 0.813377
Target:  5'- gCGGAACcCC-CCuCCGCGGcgGCGCGg- -3'
miRNA:   3'- -GCCUUGuGGcGGcGGCGCU--UGCGCag -5'
24436 5' -59.4 NC_005264.1 + 152274 0.66 0.813377
Target:  5'- aGGAACGaggaaGCaGCgGCGAACGCG-Cg -3'
miRNA:   3'- gCCUUGUgg---CGgCGgCGCUUGCGCaG- -5'
24436 5' -59.4 NC_005264.1 + 59252 0.66 0.813377
Target:  5'- gGGGccACGCCGUgGCCGaucCGAucucCGCGUUg -3'
miRNA:   3'- gCCU--UGUGGCGgCGGC---GCUu---GCGCAG- -5'
24436 5' -59.4 NC_005264.1 + 60259 0.66 0.813377
Target:  5'- gCGGucACGCgaGCUGCgGUGAGCGCcgcGUCg -3'
miRNA:   3'- -GCCu-UGUGg-CGGCGgCGCUUGCG---CAG- -5'
24436 5' -59.4 NC_005264.1 + 96496 0.66 0.813377
Target:  5'- -aGAGCGCCuCCgaaGCUGCGAACGCa-- -3'
miRNA:   3'- gcCUUGUGGcGG---CGGCGCUUGCGcag -5'
24436 5' -59.4 NC_005264.1 + 45786 0.66 0.812536
Target:  5'- cCGGAGCGgCuauugcggucuggGCCGCCGCGcugauCGCGc- -3'
miRNA:   3'- -GCCUUGUgG-------------CGGCGGCGCuu---GCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.