miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24437 3' -57.6 NC_005264.1 + 152472 0.65 0.880503
Target:  5'- cGCCCGgacagcUGCUCGCgUGUaaaaaaagggggagCAUUUUCCUCg -3'
miRNA:   3'- -CGGGC------GUGAGCGgGCA--------------GUAGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 33445 0.65 0.880503
Target:  5'- cGCCCGgacagcUGCUCGCgUGUaaaaaaagggggagCAUUUUCCUCg -3'
miRNA:   3'- -CGGGC------GUGAGCGgGCA--------------GUAGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 96613 0.66 0.87559
Target:  5'- gGCCCGCAgCUCGCCaaGUC--CUUCgCUg -3'
miRNA:   3'- -CGGGCGU-GAGCGGg-CAGuaGAAG-GAg -5'
24437 3' -57.6 NC_005264.1 + 129671 0.66 0.867663
Target:  5'- cGUUCGCacgcacuACUCGUUCGUUAaaCUUCCUCa -3'
miRNA:   3'- -CGGGCG-------UGAGCGGGCAGUa-GAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 58943 0.66 0.860992
Target:  5'- aGCCUGCGCaaGUugaCGgCGUCUUCCUUg -3'
miRNA:   3'- -CGGGCGUGagCGg--GCaGUAGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 26304 0.66 0.860992
Target:  5'- uCCCGCGucUUCGuCCgCGUCGUCUccggUCUCg -3'
miRNA:   3'- cGGGCGU--GAGC-GG-GCAGUAGAa---GGAG- -5'
24437 3' -57.6 NC_005264.1 + 113607 0.66 0.85262
Target:  5'- uGCCgCGCACUCGugcaugaCCUGUCGcgUUUCCa- -3'
miRNA:   3'- -CGG-GCGUGAGC-------GGGCAGUa-GAAGGag -5'
24437 3' -57.6 NC_005264.1 + 7586 0.66 0.845596
Target:  5'- cCCCGCGC-CGCUgCGgagaugCUUCCUCa -3'
miRNA:   3'- cGGGCGUGaGCGG-GCagua--GAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 153764 0.66 0.845596
Target:  5'- aGCUgGCA-UCGCUCGUCcucagcgcGUCgggUCCUCa -3'
miRNA:   3'- -CGGgCGUgAGCGGGCAG--------UAGa--AGGAG- -5'
24437 3' -57.6 NC_005264.1 + 34738 0.66 0.845596
Target:  5'- aGCUgGCA-UCGCUCGUCcucagcgcGUCgggUCCUCa -3'
miRNA:   3'- -CGGgCGUgAGCGGGCAG--------UAGa--AGGAG- -5'
24437 3' -57.6 NC_005264.1 + 12143 0.67 0.837614
Target:  5'- cGCCgGCGCU-GCCCGUUG-CUggggUCUCg -3'
miRNA:   3'- -CGGgCGUGAgCGGGCAGUaGAa---GGAG- -5'
24437 3' -57.6 NC_005264.1 + 80949 0.67 0.836805
Target:  5'- cGCCCGCccaUCGCCgccaaggCGcCAucgaccaauuUCUUCCUCg -3'
miRNA:   3'- -CGGGCGug-AGCGG-------GCaGU----------AGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 67374 0.67 0.828625
Target:  5'- cGCCCGCGCUCGCUgcgcccgccggcgCGguagCGUaUUCCa- -3'
miRNA:   3'- -CGGGCGUGAGCGG-------------GCa---GUAgAAGGag -5'
24437 3' -57.6 NC_005264.1 + 106437 0.67 0.821115
Target:  5'- gGCgCCGCGCUCGauaugCGaUCGUCgcgCCUCa -3'
miRNA:   3'- -CG-GGCGUGAGCgg---GC-AGUAGaa-GGAG- -5'
24437 3' -57.6 NC_005264.1 + 147981 0.67 0.821115
Target:  5'- -aCCGCACcuaUCGCUCGUgAgcUCUggagUCCUCg -3'
miRNA:   3'- cgGGCGUG---AGCGGGCAgU--AGA----AGGAG- -5'
24437 3' -57.6 NC_005264.1 + 7719 0.67 0.821115
Target:  5'- uUUCGCACcUGUCCGcCAUCccgUCCUCg -3'
miRNA:   3'- cGGGCGUGaGCGGGCaGUAGa--AGGAG- -5'
24437 3' -57.6 NC_005264.1 + 30537 0.67 0.812613
Target:  5'- aCCCGC-CUCGCUgGcgcgaacccUCGUCgUCCUCc -3'
miRNA:   3'- cGGGCGuGAGCGGgC---------AGUAGaAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 149564 0.67 0.812613
Target:  5'- aCCCGC-CUCGCUgGcgcgaacccUCGUCgUCCUCc -3'
miRNA:   3'- cGGGCGuGAGCGGgC---------AGUAGaAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 124010 0.67 0.803952
Target:  5'- uGCCCGCGCa---UCGUCGUCgUUCUCg -3'
miRNA:   3'- -CGGGCGUGagcgGGCAGUAGaAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 83385 0.67 0.803952
Target:  5'- aGCCCaGCuGC-CGCUCGUCGUCUgcgcgCCg- -3'
miRNA:   3'- -CGGG-CG-UGaGCGGGCAGUAGAa----GGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.