Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24437 | 3' | -57.6 | NC_005264.1 | + | 152472 | 0.65 | 0.880503 |
Target: 5'- cGCCCGgacagcUGCUCGCgUGUaaaaaaagggggagCAUUUUCCUCg -3' miRNA: 3'- -CGGGC------GUGAGCGgGCA--------------GUAGAAGGAG- -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 33445 | 0.65 | 0.880503 |
Target: 5'- cGCCCGgacagcUGCUCGCgUGUaaaaaaagggggagCAUUUUCCUCg -3' miRNA: 3'- -CGGGC------GUGAGCGgGCA--------------GUAGAAGGAG- -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 7586 | 0.66 | 0.845596 |
Target: 5'- cCCCGCGC-CGCUgCGgagaugCUUCCUCa -3' miRNA: 3'- cGGGCGUGaGCGG-GCagua--GAAGGAG- -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 153764 | 0.66 | 0.845596 |
Target: 5'- aGCUgGCA-UCGCUCGUCcucagcgcGUCgggUCCUCa -3' miRNA: 3'- -CGGgCGUgAGCGGGCAG--------UAGa--AGGAG- -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 34738 | 0.66 | 0.845596 |
Target: 5'- aGCUgGCA-UCGCUCGUCcucagcgcGUCgggUCCUCa -3' miRNA: 3'- -CGGgCGUgAGCGGGCAG--------UAGa--AGGAG- -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 26304 | 0.66 | 0.860992 |
Target: 5'- uCCCGCGucUUCGuCCgCGUCGUCUccggUCUCg -3' miRNA: 3'- cGGGCGU--GAGC-GG-GCAGUAGAa---GGAG- -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 129671 | 0.66 | 0.867663 |
Target: 5'- cGUUCGCacgcacuACUCGUUCGUUAaaCUUCCUCa -3' miRNA: 3'- -CGGGCG-------UGAGCGGGCAGUa-GAAGGAG- -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 96613 | 0.66 | 0.87559 |
Target: 5'- gGCCCGCAgCUCGCCaaGUC--CUUCgCUg -3' miRNA: 3'- -CGGGCGU-GAGCGGg-CAGuaGAAG-GAg -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 58943 | 0.66 | 0.860992 |
Target: 5'- aGCCUGCGCaaGUugaCGgCGUCUUCCUUg -3' miRNA: 3'- -CGGGCGUGagCGg--GCaGUAGAAGGAG- -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 113607 | 0.66 | 0.85262 |
Target: 5'- uGCCgCGCACUCGugcaugaCCUGUCGcgUUUCCa- -3' miRNA: 3'- -CGG-GCGUGAGC-------GGGCAGUa-GAAGGag -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 12143 | 0.67 | 0.837614 |
Target: 5'- cGCCgGCGCU-GCCCGUUG-CUggggUCUCg -3' miRNA: 3'- -CGGgCGUGAgCGGGCAGUaGAa---GGAG- -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 80949 | 0.67 | 0.836805 |
Target: 5'- cGCCCGCccaUCGCCgccaaggCGcCAucgaccaauuUCUUCCUCg -3' miRNA: 3'- -CGGGCGug-AGCGG-------GCaGU----------AGAAGGAG- -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 67374 | 0.67 | 0.828625 |
Target: 5'- cGCCCGCGCUCGCUgcgcccgccggcgCGguagCGUaUUCCa- -3' miRNA: 3'- -CGGGCGUGAGCGG-------------GCa---GUAgAAGGag -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 147981 | 0.67 | 0.821115 |
Target: 5'- -aCCGCACcuaUCGCUCGUgAgcUCUggagUCCUCg -3' miRNA: 3'- cgGGCGUG---AGCGGGCAgU--AGA----AGGAG- -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 149564 | 0.67 | 0.812613 |
Target: 5'- aCCCGC-CUCGCUgGcgcgaacccUCGUCgUCCUCc -3' miRNA: 3'- cGGGCGuGAGCGGgC---------AGUAGaAGGAG- -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 124010 | 0.67 | 0.803952 |
Target: 5'- uGCCCGCGCa---UCGUCGUCgUUCUCg -3' miRNA: 3'- -CGGGCGUGagcgGGCAGUAGaAGGAG- -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 83385 | 0.67 | 0.803952 |
Target: 5'- aGCCCaGCuGC-CGCUCGUCGUCUgcgcgCCg- -3' miRNA: 3'- -CGGG-CG-UGaGCGGGCAGUAGAa----GGag -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 30537 | 0.67 | 0.812613 |
Target: 5'- aCCCGC-CUCGCUgGcgcgaacccUCGUCgUCCUCc -3' miRNA: 3'- cGGGCGuGAGCGGgC---------AGUAGaAGGAG- -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 106437 | 0.67 | 0.821115 |
Target: 5'- gGCgCCGCGCUCGauaugCGaUCGUCgcgCCUCa -3' miRNA: 3'- -CG-GGCGUGAGCgg---GC-AGUAGaa-GGAG- -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 7719 | 0.67 | 0.821115 |
Target: 5'- uUUCGCACcUGUCCGcCAUCccgUCCUCg -3' miRNA: 3'- cGGGCGUGaGCGGGCaGUAGa--AGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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