miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24437 3' -57.6 NC_005264.1 + 9559 0.68 0.786188
Target:  5'- cGCCCGCGcCUCGCuacagaagCCGgguUCGUCUaUCgCUCa -3'
miRNA:   3'- -CGGGCGU-GAGCG--------GGC---AGUAGA-AG-GAG- -5'
24437 3' -57.6 NC_005264.1 + 38928 0.68 0.786188
Target:  5'- cUCCGCGgUC-CCCGgagaccccUAUCUUCCUCg -3'
miRNA:   3'- cGGGCGUgAGcGGGCa-------GUAGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 128586 0.68 0.786188
Target:  5'- cGCCCGCGcCUCGCuacagaagCCGgguUCGUCUaUCgCUCa -3'
miRNA:   3'- -CGGGCGU-GAGCG--------GGC---AGUAGA-AG-GAG- -5'
24437 3' -57.6 NC_005264.1 + 157955 0.68 0.786188
Target:  5'- cUCCGCGgUC-CCCGgagaccccUAUCUUCCUCg -3'
miRNA:   3'- cGGGCGUgAGcGGGCa-------GUAGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 78620 0.68 0.758558
Target:  5'- cGCUCGCAUUCuuguGCCUagcUCGUCcUCCUCg -3'
miRNA:   3'- -CGGGCGUGAG----CGGGc--AGUAGaAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 65202 0.68 0.749121
Target:  5'- cGCCgaGCugUUGCCCGUUAagcaugaguaccUUUUCUUCg -3'
miRNA:   3'- -CGGg-CGugAGCGGGCAGU------------AGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 67487 0.68 0.737666
Target:  5'- gGCaCGCGC-CGCCCGUCGgccccauugCCUCg -3'
miRNA:   3'- -CGgGCGUGaGCGGGCAGUagaa-----GGAG- -5'
24437 3' -57.6 NC_005264.1 + 64698 0.69 0.729957
Target:  5'- aGgCCGUGCUCGCCCGaaUCAgguUUUUUCUUg -3'
miRNA:   3'- -CgGGCGUGAGCGGGC--AGU---AGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 117916 0.69 0.729957
Target:  5'- gGCCCGCgguucGCUUGCgCCGg-AUCUcUCCUCc -3'
miRNA:   3'- -CGGGCG-----UGAGCG-GGCagUAGA-AGGAG- -5'
24437 3' -57.6 NC_005264.1 + 40410 0.69 0.710466
Target:  5'- cGCCgcacgcguaaCGCACUCGCCUuuccCGUCgaugUCCUCu -3'
miRNA:   3'- -CGG----------GCGUGAGCGGGca--GUAGa---AGGAG- -5'
24437 3' -57.6 NC_005264.1 + 78080 0.69 0.706535
Target:  5'- aGCuCCGCGCU-GCCCGUCGUUgcggcacgugaCUCa -3'
miRNA:   3'- -CG-GGCGUGAgCGGGCAGUAGaag--------GAG- -5'
24437 3' -57.6 NC_005264.1 + 92096 0.69 0.700619
Target:  5'- -gCCGCuuGCUCGCCUGUacgCGUCUUCUa- -3'
miRNA:   3'- cgGGCG--UGAGCGGGCA---GUAGAAGGag -5'
24437 3' -57.6 NC_005264.1 + 48545 0.7 0.670781
Target:  5'- uCCCGCGCgCcCCCGUCGcCUUCgUCg -3'
miRNA:   3'- cGGGCGUGaGcGGGCAGUaGAAGgAG- -5'
24437 3' -57.6 NC_005264.1 + 88922 0.7 0.650722
Target:  5'- -gUCGCACUCGUccuCCGUCAggcagucgacgUCUUUCUCg -3'
miRNA:   3'- cgGGCGUGAGCG---GGCAGU-----------AGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 136891 0.71 0.620546
Target:  5'- cGUCCGCGC-CGUCC-UCAUCUUcguacgCCUCg -3'
miRNA:   3'- -CGGGCGUGaGCGGGcAGUAGAA------GGAG- -5'
24437 3' -57.6 NC_005264.1 + 126744 0.71 0.620546
Target:  5'- cGUUCGCACcUGUCCGcCAUCccgUCCUCg -3'
miRNA:   3'- -CGGGCGUGaGCGGGCaGUAGa--AGGAG- -5'
24437 3' -57.6 NC_005264.1 + 15832 0.71 0.600458
Target:  5'- cGUUCGCGCUCGUaaaGUaguUCUUCCUCg -3'
miRNA:   3'- -CGGGCGUGAGCGgg-CAgu-AGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 67120 0.72 0.530227
Target:  5'- cGCCCGCGCUUGCUuuacuguuacagCGUCAacgccgaUCUUCCc- -3'
miRNA:   3'- -CGGGCGUGAGCGG------------GCAGU-------AGAAGGag -5'
24437 3' -57.6 NC_005264.1 + 159878 0.72 0.521517
Target:  5'- cCUCGUcgUCGuCCuCGUCAUCUUCCUCg -3'
miRNA:   3'- cGGGCGugAGC-GG-GCAGUAGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 40852 0.72 0.521517
Target:  5'- cCUCGUcgUCGuCCuCGUCAUCUUCCUCg -3'
miRNA:   3'- cGGGCGugAGC-GG-GCAGUAGAAGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.