miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24437 3' -57.6 NC_005264.1 + 7586 0.66 0.845596
Target:  5'- cCCCGCGC-CGCUgCGgagaugCUUCCUCa -3'
miRNA:   3'- cGGGCGUGaGCGG-GCagua--GAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 7719 0.67 0.821115
Target:  5'- uUUCGCACcUGUCCGcCAUCccgUCCUCg -3'
miRNA:   3'- cGGGCGUGaGCGGGCaGUAGa--AGGAG- -5'
24437 3' -57.6 NC_005264.1 + 9559 0.68 0.786188
Target:  5'- cGCCCGCGcCUCGCuacagaagCCGgguUCGUCUaUCgCUCa -3'
miRNA:   3'- -CGGGCGU-GAGCG--------GGC---AGUAGA-AG-GAG- -5'
24437 3' -57.6 NC_005264.1 + 12143 0.67 0.837614
Target:  5'- cGCCgGCGCU-GCCCGUUG-CUggggUCUCg -3'
miRNA:   3'- -CGGgCGUGAgCGGGCAGUaGAa---GGAG- -5'
24437 3' -57.6 NC_005264.1 + 15832 0.71 0.600458
Target:  5'- cGUUCGCGCUCGUaaaGUaguUCUUCCUCg -3'
miRNA:   3'- -CGGGCGUGAGCGgg-CAgu-AGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 26304 0.66 0.860992
Target:  5'- uCCCGCGucUUCGuCCgCGUCGUCUccggUCUCg -3'
miRNA:   3'- cGGGCGU--GAGC-GG-GCAGUAGAa---GGAG- -5'
24437 3' -57.6 NC_005264.1 + 30263 0.77 0.277097
Target:  5'- cGCCCGCGC-CGCUC-UCcUCUUCCUCc -3'
miRNA:   3'- -CGGGCGUGaGCGGGcAGuAGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 30537 0.67 0.812613
Target:  5'- aCCCGC-CUCGCUgGcgcgaacccUCGUCgUCCUCc -3'
miRNA:   3'- cGGGCGuGAGCGGgC---------AGUAGaAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 33445 0.65 0.880503
Target:  5'- cGCCCGgacagcUGCUCGCgUGUaaaaaaagggggagCAUUUUCCUCg -3'
miRNA:   3'- -CGGGC------GUGAGCGgGCA--------------GUAGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 34738 0.66 0.845596
Target:  5'- aGCUgGCA-UCGCUCGUCcucagcgcGUCgggUCCUCa -3'
miRNA:   3'- -CGGgCGUgAGCGGGCAG--------UAGa--AGGAG- -5'
24437 3' -57.6 NC_005264.1 + 38928 0.68 0.786188
Target:  5'- cUCCGCGgUC-CCCGgagaccccUAUCUUCCUCg -3'
miRNA:   3'- cGGGCGUgAGcGGGCa-------GUAGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 40081 0.83 0.126485
Target:  5'- gGCCC-CGCUC-CUCGUCGUCUUCCUCg -3'
miRNA:   3'- -CGGGcGUGAGcGGGCAGUAGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 40410 0.69 0.710466
Target:  5'- cGCCgcacgcguaaCGCACUCGCCUuuccCGUCgaugUCCUCu -3'
miRNA:   3'- -CGG----------GCGUGAGCGGGca--GUAGa---AGGAG- -5'
24437 3' -57.6 NC_005264.1 + 40852 0.72 0.521517
Target:  5'- cCUCGUcgUCGuCCuCGUCAUCUUCCUCg -3'
miRNA:   3'- cGGGCGugAGC-GG-GCAGUAGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 48545 0.7 0.670781
Target:  5'- uCCCGCGCgCcCCCGUCGcCUUCgUCg -3'
miRNA:   3'- cGGGCGUGaGcGGGCAGUaGAAGgAG- -5'
24437 3' -57.6 NC_005264.1 + 56988 0.77 0.277097
Target:  5'- cGCCCGCGCUCGCUugcuuuCGUCAUCUgcagcggagUCgUCu -3'
miRNA:   3'- -CGGGCGUGAGCGG------GCAGUAGA---------AGgAG- -5'
24437 3' -57.6 NC_005264.1 + 58943 0.66 0.860992
Target:  5'- aGCCUGCGCaaGUugaCGgCGUCUUCCUUg -3'
miRNA:   3'- -CGGGCGUGagCGg--GCaGUAGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 64698 0.69 0.729957
Target:  5'- aGgCCGUGCUCGCCCGaaUCAgguUUUUUCUUg -3'
miRNA:   3'- -CgGGCGUGAGCGGGC--AGU---AGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 65202 0.68 0.749121
Target:  5'- cGCCgaGCugUUGCCCGUUAagcaugaguaccUUUUCUUCg -3'
miRNA:   3'- -CGGg-CGugAGCGGGCAGU------------AGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 67120 0.72 0.530227
Target:  5'- cGCCCGCGCUUGCUuuacuguuacagCGUCAacgccgaUCUUCCc- -3'
miRNA:   3'- -CGGGCGUGAGCGG------------GCAGU-------AGAAGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.