miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24437 3' -57.6 NC_005264.1 + 67374 0.67 0.828625
Target:  5'- cGCCCGCGCUCGCUgcgcccgccggcgCGguagCGUaUUCCa- -3'
miRNA:   3'- -CGGGCGUGAGCGG-------------GCa---GUAgAAGGag -5'
24437 3' -57.6 NC_005264.1 + 67487 0.68 0.737666
Target:  5'- gGCaCGCGC-CGCCCGUCGgccccauugCCUCg -3'
miRNA:   3'- -CGgGCGUGaGCGGGCAGUagaa-----GGAG- -5'
24437 3' -57.6 NC_005264.1 + 75786 0.74 0.438019
Target:  5'- cGUUCGCGCUCGCCUccagGUCGUCgccgUCCg- -3'
miRNA:   3'- -CGGGCGUGAGCGGG----CAGUAGa---AGGag -5'
24437 3' -57.6 NC_005264.1 + 78080 0.69 0.706535
Target:  5'- aGCuCCGCGCU-GCCCGUCGUUgcggcacgugaCUCa -3'
miRNA:   3'- -CG-GGCGUGAgCGGGCAGUAGaag--------GAG- -5'
24437 3' -57.6 NC_005264.1 + 78620 0.68 0.758558
Target:  5'- cGCUCGCAUUCuuguGCCUagcUCGUCcUCCUCg -3'
miRNA:   3'- -CGGGCGUGAG----CGGGc--AGUAGaAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 80949 0.67 0.836805
Target:  5'- cGCCCGCccaUCGCCgccaaggCGcCAucgaccaauuUCUUCCUCg -3'
miRNA:   3'- -CGGGCGug-AGCGG-------GCaGU----------AGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 82725 0.73 0.465043
Target:  5'- uGCuCUGCGCUUGcCCCGUCA---UCCUCg -3'
miRNA:   3'- -CG-GGCGUGAGC-GGGCAGUagaAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 83385 0.67 0.803952
Target:  5'- aGCCCaGCuGC-CGCUCGUCGUCUgcgcgCCg- -3'
miRNA:   3'- -CGGG-CG-UGaGCGGGCAGUAGAa----GGag -5'
24437 3' -57.6 NC_005264.1 + 88922 0.7 0.650722
Target:  5'- -gUCGCACUCGUccuCCGUCAggcagucgacgUCUUUCUCg -3'
miRNA:   3'- cgGGCGUGAGCG---GGCAGU-----------AGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 89316 0.94 0.02385
Target:  5'- uGCCCGCACUgC-CCCGUCAUCUUCCUCg -3'
miRNA:   3'- -CGGGCGUGA-GcGGGCAGUAGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 92096 0.69 0.700619
Target:  5'- -gCCGCuuGCUCGCCUGUacgCGUCUUCUa- -3'
miRNA:   3'- cgGGCG--UGAGCGGGCA---GUAGAAGGag -5'
24437 3' -57.6 NC_005264.1 + 96613 0.66 0.87559
Target:  5'- gGCCCGCAgCUCGCCaaGUC--CUUCgCUg -3'
miRNA:   3'- -CGGGCGU-GAGCGGg-CAGuaGAAG-GAg -5'
24437 3' -57.6 NC_005264.1 + 106437 0.67 0.821115
Target:  5'- gGCgCCGCGCUCGauaugCGaUCGUCgcgCCUCa -3'
miRNA:   3'- -CG-GGCGUGAGCgg---GC-AGUAGaa-GGAG- -5'
24437 3' -57.6 NC_005264.1 + 113607 0.66 0.85262
Target:  5'- uGCCgCGCACUCGugcaugaCCUGUCGcgUUUCCa- -3'
miRNA:   3'- -CGG-GCGUGAGC-------GGGCAGUa-GAAGGag -5'
24437 3' -57.6 NC_005264.1 + 117916 0.69 0.729957
Target:  5'- gGCCCGCgguucGCUUGCgCCGg-AUCUcUCCUCc -3'
miRNA:   3'- -CGGGCG-----UGAGCG-GGCagUAGA-AGGAG- -5'
24437 3' -57.6 NC_005264.1 + 118973 0.73 0.455937
Target:  5'- -gCCGCGCUCGuUCCGUC-UCUUCCcCg -3'
miRNA:   3'- cgGGCGUGAGC-GGGCAGuAGAAGGaG- -5'
24437 3' -57.6 NC_005264.1 + 124010 0.67 0.803952
Target:  5'- uGCCCGCGCa---UCGUCGUCgUUCUCg -3'
miRNA:   3'- -CGGGCGUGagcgGGCAGUAGaAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 126744 0.71 0.620546
Target:  5'- cGUUCGCACcUGUCCGcCAUCccgUCCUCg -3'
miRNA:   3'- -CGGGCGUGaGCGGGCaGUAGa--AGGAG- -5'
24437 3' -57.6 NC_005264.1 + 128586 0.68 0.786188
Target:  5'- cGCCCGCGcCUCGCuacagaagCCGgguUCGUCUaUCgCUCa -3'
miRNA:   3'- -CGGGCGU-GAGCG--------GGC---AGUAGA-AG-GAG- -5'
24437 3' -57.6 NC_005264.1 + 129671 0.66 0.867663
Target:  5'- cGUUCGCacgcacuACUCGUUCGUUAaaCUUCCUCa -3'
miRNA:   3'- -CGGGCG-------UGAGCGGGCAGUa-GAAGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.