miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24437 3' -57.6 NC_005264.1 + 159878 0.72 0.521517
Target:  5'- cCUCGUcgUCGuCCuCGUCAUCUUCCUCg -3'
miRNA:   3'- cGGGCGugAGC-GG-GCAGUAGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 159108 0.83 0.126485
Target:  5'- gGCCC-CGCUC-CUCGUCGUCUUCCUCg -3'
miRNA:   3'- -CGGGcGUGAGcGGGCAGUAGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 157955 0.68 0.786188
Target:  5'- cUCCGCGgUC-CCCGgagaccccUAUCUUCCUCg -3'
miRNA:   3'- cGGGCGUgAGcGGGCa-------GUAGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 153764 0.66 0.845596
Target:  5'- aGCUgGCA-UCGCUCGUCcucagcgcGUCgggUCCUCa -3'
miRNA:   3'- -CGGgCGUgAGCGGGCAG--------UAGa--AGGAG- -5'
24437 3' -57.6 NC_005264.1 + 152472 0.65 0.880503
Target:  5'- cGCCCGgacagcUGCUCGCgUGUaaaaaaagggggagCAUUUUCCUCg -3'
miRNA:   3'- -CGGGC------GUGAGCGgGCA--------------GUAGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 149564 0.67 0.812613
Target:  5'- aCCCGC-CUCGCUgGcgcgaacccUCGUCgUCCUCc -3'
miRNA:   3'- cGGGCGuGAGCGGgC---------AGUAGaAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 149290 0.77 0.277097
Target:  5'- cGCCCGCGC-CGCUC-UCcUCUUCCUCc -3'
miRNA:   3'- -CGGGCGUGaGCGGGcAGuAGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 148872 0.75 0.362715
Target:  5'- cCCCGCGuCUCGCUCGUC---UUCCUCg -3'
miRNA:   3'- cGGGCGU-GAGCGGGCAGuagAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 147981 0.67 0.821115
Target:  5'- -aCCGCACcuaUCGCUCGUgAgcUCUggagUCCUCg -3'
miRNA:   3'- cgGGCGUG---AGCGGGCAgU--AGA----AGGAG- -5'
24437 3' -57.6 NC_005264.1 + 136891 0.71 0.620546
Target:  5'- cGUCCGCGC-CGUCC-UCAUCUUcguacgCCUCg -3'
miRNA:   3'- -CGGGCGUGaGCGGGcAGUAGAA------GGAG- -5'
24437 3' -57.6 NC_005264.1 + 132732 0.74 0.411918
Target:  5'- gGUCCGCGC-CGCCCG-CAUCUcgaCUCg -3'
miRNA:   3'- -CGGGCGUGaGCGGGCaGUAGAag-GAG- -5'
24437 3' -57.6 NC_005264.1 + 129671 0.66 0.867663
Target:  5'- cGUUCGCacgcacuACUCGUUCGUUAaaCUUCCUCa -3'
miRNA:   3'- -CGGGCG-------UGAGCGGGCAGUa-GAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 128586 0.68 0.786188
Target:  5'- cGCCCGCGcCUCGCuacagaagCCGgguUCGUCUaUCgCUCa -3'
miRNA:   3'- -CGGGCGU-GAGCG--------GGC---AGUAGA-AG-GAG- -5'
24437 3' -57.6 NC_005264.1 + 126744 0.71 0.620546
Target:  5'- cGUUCGCACcUGUCCGcCAUCccgUCCUCg -3'
miRNA:   3'- -CGGGCGUGaGCGGGCaGUAGa--AGGAG- -5'
24437 3' -57.6 NC_005264.1 + 124010 0.67 0.803952
Target:  5'- uGCCCGCGCa---UCGUCGUCgUUCUCg -3'
miRNA:   3'- -CGGGCGUGagcgGGCAGUAGaAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 118973 0.73 0.455937
Target:  5'- -gCCGCGCUCGuUCCGUC-UCUUCCcCg -3'
miRNA:   3'- cgGGCGUGAGC-GGGCAGuAGAAGGaG- -5'
24437 3' -57.6 NC_005264.1 + 117916 0.69 0.729957
Target:  5'- gGCCCGCgguucGCUUGCgCCGg-AUCUcUCCUCc -3'
miRNA:   3'- -CGGGCG-----UGAGCG-GGCagUAGA-AGGAG- -5'
24437 3' -57.6 NC_005264.1 + 113607 0.66 0.85262
Target:  5'- uGCCgCGCACUCGugcaugaCCUGUCGcgUUUCCa- -3'
miRNA:   3'- -CGG-GCGUGAGC-------GGGCAGUa-GAAGGag -5'
24437 3' -57.6 NC_005264.1 + 106437 0.67 0.821115
Target:  5'- gGCgCCGCGCUCGauaugCGaUCGUCgcgCCUCa -3'
miRNA:   3'- -CG-GGCGUGAGCgg---GC-AGUAGaa-GGAG- -5'
24437 3' -57.6 NC_005264.1 + 96613 0.66 0.87559
Target:  5'- gGCCCGCAgCUCGCCaaGUC--CUUCgCUg -3'
miRNA:   3'- -CGGGCGU-GAGCGGg-CAGuaGAAG-GAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.