miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24437 3' -57.6 NC_005264.1 + 153764 0.66 0.845596
Target:  5'- aGCUgGCA-UCGCUCGUCcucagcgcGUCgggUCCUCa -3'
miRNA:   3'- -CGGgCGUgAGCGGGCAG--------UAGa--AGGAG- -5'
24437 3' -57.6 NC_005264.1 + 157955 0.68 0.786188
Target:  5'- cUCCGCGgUC-CCCGgagaccccUAUCUUCCUCg -3'
miRNA:   3'- cGGGCGUgAGcGGGCa-------GUAGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 128586 0.68 0.786188
Target:  5'- cGCCCGCGcCUCGCuacagaagCCGgguUCGUCUaUCgCUCa -3'
miRNA:   3'- -CGGGCGU-GAGCG--------GGC---AGUAGA-AG-GAG- -5'
24437 3' -57.6 NC_005264.1 + 124010 0.67 0.803952
Target:  5'- uGCCCGCGCa---UCGUCGUCgUUCUCg -3'
miRNA:   3'- -CGGGCGUGagcgGGCAGUAGaAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 149564 0.67 0.812613
Target:  5'- aCCCGC-CUCGCUgGcgcgaacccUCGUCgUCCUCc -3'
miRNA:   3'- cGGGCGuGAGCGGgC---------AGUAGaAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 147981 0.67 0.821115
Target:  5'- -aCCGCACcuaUCGCUCGUgAgcUCUggagUCCUCg -3'
miRNA:   3'- cgGGCGUG---AGCGGGCAgU--AGA----AGGAG- -5'
24437 3' -57.6 NC_005264.1 + 67374 0.67 0.828625
Target:  5'- cGCCCGCGCUCGCUgcgcccgccggcgCGguagCGUaUUCCa- -3'
miRNA:   3'- -CGGGCGUGAGCGG-------------GCa---GUAgAAGGag -5'
24437 3' -57.6 NC_005264.1 + 80949 0.67 0.836805
Target:  5'- cGCCCGCccaUCGCCgccaaggCGcCAucgaccaauuUCUUCCUCg -3'
miRNA:   3'- -CGGGCGug-AGCGG-------GCaGU----------AGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 12143 0.67 0.837614
Target:  5'- cGCCgGCGCU-GCCCGUUG-CUggggUCUCg -3'
miRNA:   3'- -CGGgCGUGAgCGGGCAGUaGAa---GGAG- -5'
24437 3' -57.6 NC_005264.1 + 65202 0.68 0.749121
Target:  5'- cGCCgaGCugUUGCCCGUUAagcaugaguaccUUUUCUUCg -3'
miRNA:   3'- -CGGg-CGugAGCGGGCAGU------------AGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 117916 0.69 0.729957
Target:  5'- gGCCCGCgguucGCUUGCgCCGg-AUCUcUCCUCc -3'
miRNA:   3'- -CGGGCG-----UGAGCG-GGCagUAGA-AGGAG- -5'
24437 3' -57.6 NC_005264.1 + 64698 0.69 0.729957
Target:  5'- aGgCCGUGCUCGCCCGaaUCAgguUUUUUCUUg -3'
miRNA:   3'- -CgGGCGUGAGCGGGC--AGU---AGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 149290 0.77 0.277097
Target:  5'- cGCCCGCGC-CGCUC-UCcUCUUCCUCc -3'
miRNA:   3'- -CGGGCGUGaGCGGGcAGuAGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 56988 0.77 0.277097
Target:  5'- cGCCCGCGCUCGCUugcuuuCGUCAUCUgcagcggagUCgUCu -3'
miRNA:   3'- -CGGGCGUGAGCGG------GCAGUAGA---------AGgAG- -5'
24437 3' -57.6 NC_005264.1 + 75786 0.74 0.438019
Target:  5'- cGUUCGCGCUCGCCUccagGUCGUCgccgUCCg- -3'
miRNA:   3'- -CGGGCGUGAGCGGG----CAGUAGa---AGGag -5'
24437 3' -57.6 NC_005264.1 + 118973 0.73 0.455937
Target:  5'- -gCCGCGCUCGuUCCGUC-UCUUCCcCg -3'
miRNA:   3'- cgGGCGUGAGC-GGGCAGuAGAAGGaG- -5'
24437 3' -57.6 NC_005264.1 + 159878 0.72 0.521517
Target:  5'- cCUCGUcgUCGuCCuCGUCAUCUUCCUCg -3'
miRNA:   3'- cGGGCGugAGC-GG-GCAGUAGAAGGAG- -5'
24437 3' -57.6 NC_005264.1 + 67120 0.72 0.530227
Target:  5'- cGCCCGCGCUUGCUuuacuguuacagCGUCAacgccgaUCUUCCc- -3'
miRNA:   3'- -CGGGCGUGAGCGG------------GCAGU-------AGAAGGag -5'
24437 3' -57.6 NC_005264.1 + 126744 0.71 0.620546
Target:  5'- cGUUCGCACcUGUCCGcCAUCccgUCCUCg -3'
miRNA:   3'- -CGGGCGUGaGCGGGCaGUAGa--AGGAG- -5'
24437 3' -57.6 NC_005264.1 + 40410 0.69 0.710466
Target:  5'- cGCCgcacgcguaaCGCACUCGCCUuuccCGUCgaugUCCUCu -3'
miRNA:   3'- -CGG----------GCGUGAGCGGGca--GUAGa---AGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.