Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24437 | 3' | -57.6 | NC_005264.1 | + | 33445 | 0.65 | 0.880503 |
Target: 5'- cGCCCGgacagcUGCUCGCgUGUaaaaaaagggggagCAUUUUCCUCg -3' miRNA: 3'- -CGGGC------GUGAGCGgGCA--------------GUAGAAGGAG- -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 136891 | 0.71 | 0.620546 |
Target: 5'- cGUCCGCGC-CGUCC-UCAUCUUcguacgCCUCg -3' miRNA: 3'- -CGGGCGUGaGCGGGcAGUAGAA------GGAG- -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 40852 | 0.72 | 0.521517 |
Target: 5'- cCUCGUcgUCGuCCuCGUCAUCUUCCUCg -3' miRNA: 3'- cGGGCGugAGC-GG-GCAGUAGAAGGAG- -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 89316 | 0.94 | 0.02385 |
Target: 5'- uGCCCGCACUgC-CCCGUCAUCUUCCUCg -3' miRNA: 3'- -CGGGCGUGA-GcGGGCAGUAGAAGGAG- -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 34738 | 0.66 | 0.845596 |
Target: 5'- aGCUgGCA-UCGCUCGUCcucagcgcGUCgggUCCUCa -3' miRNA: 3'- -CGGgCGUgAGCGGGCAG--------UAGa--AGGAG- -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 106437 | 0.67 | 0.821115 |
Target: 5'- gGCgCCGCGCUCGauaugCGaUCGUCgcgCCUCa -3' miRNA: 3'- -CG-GGCGUGAGCgg---GC-AGUAGaa-GGAG- -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 30537 | 0.67 | 0.812613 |
Target: 5'- aCCCGC-CUCGCUgGcgcgaacccUCGUCgUCCUCc -3' miRNA: 3'- cGGGCGuGAGCGGgC---------AGUAGaAGGAG- -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 83385 | 0.67 | 0.803952 |
Target: 5'- aGCCCaGCuGC-CGCUCGUCGUCUgcgcgCCg- -3' miRNA: 3'- -CGGG-CG-UGaGCGGGCAGUAGAa----GGag -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 78620 | 0.68 | 0.758558 |
Target: 5'- cGCUCGCAUUCuuguGCCUagcUCGUCcUCCUCg -3' miRNA: 3'- -CGGGCGUGAG----CGGGc--AGUAGaAGGAG- -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 88922 | 0.7 | 0.650722 |
Target: 5'- -gUCGCACUCGUccuCCGUCAggcagucgacgUCUUUCUCg -3' miRNA: 3'- cgGGCGUGAGCG---GGCAGU-----------AGAAGGAG- -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 78080 | 0.69 | 0.706535 |
Target: 5'- aGCuCCGCGCU-GCCCGUCGUUgcggcacgugaCUCa -3' miRNA: 3'- -CG-GGCGUGAgCGGGCAGUAGaag--------GAG- -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 38928 | 0.68 | 0.786188 |
Target: 5'- cUCCGCGgUC-CCCGgagaccccUAUCUUCCUCg -3' miRNA: 3'- cGGGCGUgAGcGGGCa-------GUAGAAGGAG- -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 96613 | 0.66 | 0.87559 |
Target: 5'- gGCCCGCAgCUCGCCaaGUC--CUUCgCUg -3' miRNA: 3'- -CGGGCGU-GAGCGGg-CAGuaGAAG-GAg -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 92096 | 0.69 | 0.700619 |
Target: 5'- -gCCGCuuGCUCGCCUGUacgCGUCUUCUa- -3' miRNA: 3'- cgGGCG--UGAGCGGGCA---GUAGAAGGag -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 129671 | 0.66 | 0.867663 |
Target: 5'- cGUUCGCacgcacuACUCGUUCGUUAaaCUUCCUCa -3' miRNA: 3'- -CGGGCG-------UGAGCGGGCAGUa-GAAGGAG- -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 9559 | 0.68 | 0.786188 |
Target: 5'- cGCCCGCGcCUCGCuacagaagCCGgguUCGUCUaUCgCUCa -3' miRNA: 3'- -CGGGCGU-GAGCG--------GGC---AGUAGA-AG-GAG- -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 48545 | 0.7 | 0.670781 |
Target: 5'- uCCCGCGCgCcCCCGUCGcCUUCgUCg -3' miRNA: 3'- cGGGCGUGaGcGGGCAGUaGAAGgAG- -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 15832 | 0.71 | 0.600458 |
Target: 5'- cGUUCGCGCUCGUaaaGUaguUCUUCCUCg -3' miRNA: 3'- -CGGGCGUGAGCGgg-CAgu-AGAAGGAG- -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 26304 | 0.66 | 0.860992 |
Target: 5'- uCCCGCGucUUCGuCCgCGUCGUCUccggUCUCg -3' miRNA: 3'- cGGGCGU--GAGC-GG-GCAGUAGAa---GGAG- -5' |
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24437 | 3' | -57.6 | NC_005264.1 | + | 7719 | 0.67 | 0.821115 |
Target: 5'- uUUCGCACcUGUCCGcCAUCccgUCCUCg -3' miRNA: 3'- cGGGCGUGaGCGGGCaGUAGa--AGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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