miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24438 3' -53.5 NC_005264.1 + 142804 0.66 0.977485
Target:  5'- -gACGUgACGCUgCACgggugCGAGcgCGCc -3'
miRNA:   3'- cgUGCAgUGCGA-GUGa----GCUCuaGCGu -5'
24438 3' -53.5 NC_005264.1 + 8892 0.66 0.977485
Target:  5'- uGUACGUacaACGUgUCGCUgGAGAcgCGCGu -3'
miRNA:   3'- -CGUGCAg--UGCG-AGUGAgCUCUa-GCGU- -5'
24438 3' -53.5 NC_005264.1 + 134932 0.66 0.977485
Target:  5'- cGguCGUCGuCGCUCACccucgcCGAGA-CGCu -3'
miRNA:   3'- -CguGCAGU-GCGAGUGa-----GCUCUaGCGu -5'
24438 3' -53.5 NC_005264.1 + 134097 0.66 0.977485
Target:  5'- aGCACGUCuggGCGCagGCU-GAGAcuagugcuUCGCGc -3'
miRNA:   3'- -CGUGCAG---UGCGagUGAgCUCU--------AGCGU- -5'
24438 3' -53.5 NC_005264.1 + 33212 0.66 0.977245
Target:  5'- gGCugGcgGCGCUCggcgucuACUCGAGAagcuUCGCc -3'
miRNA:   3'- -CGugCagUGCGAG-------UGAGCUCU----AGCGu -5'
24438 3' -53.5 NC_005264.1 + 62221 0.66 0.969436
Target:  5'- gGCGCGcUC-CGCggcCGCuUCGGGGUCGUc -3'
miRNA:   3'- -CGUGC-AGuGCGa--GUG-AGCUCUAGCGu -5'
24438 3' -53.5 NC_005264.1 + 72849 0.66 0.966347
Target:  5'- -aGCGUCGCGCUCGaUCGgcauAGGUgUGCAa -3'
miRNA:   3'- cgUGCAGUGCGAGUgAGC----UCUA-GCGU- -5'
24438 3' -53.5 NC_005264.1 + 138435 0.66 0.966347
Target:  5'- -uGCGUCGCGCU-GCUCGcGAUCu-- -3'
miRNA:   3'- cgUGCAGUGCGAgUGAGCuCUAGcgu -5'
24438 3' -53.5 NC_005264.1 + 78687 0.66 0.966347
Target:  5'- gGCGCG-CGCGCUgcgacCACUuccCGGGGcUCGCGa -3'
miRNA:   3'- -CGUGCaGUGCGA-----GUGA---GCUCU-AGCGU- -5'
24438 3' -53.5 NC_005264.1 + 49781 0.66 0.966347
Target:  5'- gGCAUGUC-CGuCUCGCguaAGAUCGCc -3'
miRNA:   3'- -CGUGCAGuGC-GAGUGagcUCUAGCGu -5'
24438 3' -53.5 NC_005264.1 + 40037 0.66 0.966026
Target:  5'- uGUGCgGUgGCGCUaaCACucugguuUCGAGGUCGCGg -3'
miRNA:   3'- -CGUG-CAgUGCGA--GUG-------AGCUCUAGCGU- -5'
24438 3' -53.5 NC_005264.1 + 147387 0.67 0.963043
Target:  5'- cGCGuCGUCGCGCUuguccaCACUCauGAGcucccAUCGCGc -3'
miRNA:   3'- -CGU-GCAGUGCGA------GUGAG--CUC-----UAGCGU- -5'
24438 3' -53.5 NC_005264.1 + 36146 0.67 0.963043
Target:  5'- cCACGUaGCGCUgugcgaGCUCGGGAagCGCGa -3'
miRNA:   3'- cGUGCAgUGCGAg-----UGAGCUCUa-GCGU- -5'
24438 3' -53.5 NC_005264.1 + 156684 0.67 0.963043
Target:  5'- aCACGUgCACGCgaugCGCgaCGGGcgCGCGg -3'
miRNA:   3'- cGUGCA-GUGCGa---GUGa-GCUCuaGCGU- -5'
24438 3' -53.5 NC_005264.1 + 75776 0.67 0.962701
Target:  5'- gGCugGuucucguUCGCGCUCGcCUCcAGGUCGUc -3'
miRNA:   3'- -CGugC-------AGUGCGAGU-GAGcUCUAGCGu -5'
24438 3' -53.5 NC_005264.1 + 126683 0.67 0.95952
Target:  5'- --cCGUCGCGCUUcC-CGAGcUCGCAc -3'
miRNA:   3'- cguGCAGUGCGAGuGaGCUCuAGCGU- -5'
24438 3' -53.5 NC_005264.1 + 42484 0.67 0.95952
Target:  5'- uGCGUGUCccCGCUCGCUggguuuaGGGAUCGCc -3'
miRNA:   3'- -CGUGCAGu-GCGAGUGAg------CUCUAGCGu -5'
24438 3' -53.5 NC_005264.1 + 161511 0.67 0.95952
Target:  5'- uGCGUGUCccCGCUCGCUggguuuaGGGAUCGCc -3'
miRNA:   3'- -CGUGCAGu-GCGAGUGAg------CUCUAGCGu -5'
24438 3' -53.5 NC_005264.1 + 30552 0.67 0.955772
Target:  5'- --gUGUCGCGaUCACUucuaccggCGGGGUCGCAg -3'
miRNA:   3'- cguGCAGUGCgAGUGA--------GCUCUAGCGU- -5'
24438 3' -53.5 NC_005264.1 + 150779 0.67 0.947586
Target:  5'- gGCGCcUUugGCUCGCacCGGGAugguUCGCGg -3'
miRNA:   3'- -CGUGcAGugCGAGUGa-GCUCU----AGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.