Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24438 | 3' | -53.5 | NC_005264.1 | + | 29765 | 0.67 | 0.947586 |
Target: 5'- cGCAC--CACaGCUCGCUCGcGGcUCGCAc -3' miRNA: 3'- -CGUGcaGUG-CGAGUGAGCuCU-AGCGU- -5' |
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24438 | 3' | -53.5 | NC_005264.1 | + | 31753 | 0.67 | 0.947586 |
Target: 5'- gGCGCcUUugGCUCGCacCGGGAugguUCGCGg -3' miRNA: 3'- -CGUGcAGugCGAGUGa-GCUCU----AGCGU- -5' |
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24438 | 3' | -53.5 | NC_005264.1 | + | 100741 | 0.68 | 0.933531 |
Target: 5'- cGCugGUCGaGCUCGC-CGAGG-CGUc -3' miRNA: 3'- -CGugCAGUgCGAGUGaGCUCUaGCGu -5' |
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24438 | 3' | -53.5 | NC_005264.1 | + | 102560 | 0.68 | 0.933531 |
Target: 5'- aGUACGUCaugcccgacgcgGCGCUCAC-CGcAGcUCGCGu -3' miRNA: 3'- -CGUGCAG------------UGCGAGUGaGC-UCuAGCGU- -5' |
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24438 | 3' | -53.5 | NC_005264.1 | + | 25857 | 0.68 | 0.933531 |
Target: 5'- -aGCGUCuCGCUUACcgCGAGA-CGCu -3' miRNA: 3'- cgUGCAGuGCGAGUGa-GCUCUaGCGu -5' |
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24438 | 3' | -53.5 | NC_005264.1 | + | 62650 | 0.68 | 0.922957 |
Target: 5'- aGCgaaGUCGCGCUCGuagUUCGccaAGAUCGCu -3' miRNA: 3'- -CGug-CAGUGCGAGU---GAGC---UCUAGCGu -5' |
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24438 | 3' | -53.5 | NC_005264.1 | + | 149409 | 0.68 | 0.917306 |
Target: 5'- cCGCGUCGCGuCUCGgCggCGGcGGUCGCGc -3' miRNA: 3'- cGUGCAGUGC-GAGU-Ga-GCU-CUAGCGU- -5' |
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24438 | 3' | -53.5 | NC_005264.1 | + | 30382 | 0.68 | 0.917306 |
Target: 5'- cCGCGUCGCGuCUCGgCggCGGcGGUCGCGc -3' miRNA: 3'- cGUGCAGUGC-GAGU-Ga-GCU-CUAGCGU- -5' |
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24438 | 3' | -53.5 | NC_005264.1 | + | 5366 | 0.69 | 0.911415 |
Target: 5'- uCGCGUCGCGCUCuuuACcCGAGuagcCGCGu -3' miRNA: 3'- cGUGCAGUGCGAG---UGaGCUCua--GCGU- -5' |
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24438 | 3' | -53.5 | NC_005264.1 | + | 141591 | 0.69 | 0.905284 |
Target: 5'- cCGCGgCGCGCaCACUCGAGccGUCGUc -3' miRNA: 3'- cGUGCaGUGCGaGUGAGCUC--UAGCGu -5' |
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24438 | 3' | -53.5 | NC_005264.1 | + | 16393 | 0.69 | 0.892312 |
Target: 5'- uGCcCGUgGCGCauuggCACUCGGGGagGCAa -3' miRNA: 3'- -CGuGCAgUGCGa----GUGAGCUCUagCGU- -5' |
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24438 | 3' | -53.5 | NC_005264.1 | + | 148500 | 0.69 | 0.885478 |
Target: 5'- cGCugGUCGCGUUgGCggCGAGcgcCGCGg -3' miRNA: 3'- -CGugCAGUGCGAgUGa-GCUCua-GCGU- -5' |
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24438 | 3' | -53.5 | NC_005264.1 | + | 4549 | 0.7 | 0.871134 |
Target: 5'- -gGCGUCGCGC-CAaguCUCGGGAUCaCAa -3' miRNA: 3'- cgUGCAGUGCGaGU---GAGCUCUAGcGU- -5' |
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24438 | 3' | -53.5 | NC_005264.1 | + | 123576 | 0.7 | 0.871134 |
Target: 5'- -gGCGUCGCGC-CAaguCUCGGGAUCaCAa -3' miRNA: 3'- cgUGCAGUGCGaGU---GAGCUCUAGcGU- -5' |
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24438 | 3' | -53.5 | NC_005264.1 | + | 31583 | 0.71 | 0.839889 |
Target: 5'- cGCGCaGUUACgGCgggCACUuuugaCGAGAUCGCGa -3' miRNA: 3'- -CGUG-CAGUG-CGa--GUGA-----GCUCUAGCGU- -5' |
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24438 | 3' | -53.5 | NC_005264.1 | + | 77186 | 0.71 | 0.823092 |
Target: 5'- uCAUGUCGCGCUCGCggGccAUCGCGg -3' miRNA: 3'- cGUGCAGUGCGAGUGagCucUAGCGU- -5' |
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24438 | 3' | -53.5 | NC_005264.1 | + | 66504 | 0.71 | 0.814426 |
Target: 5'- uGCGCGgCGCGCUCGa-CGAGcUCGCu -3' miRNA: 3'- -CGUGCaGUGCGAGUgaGCUCuAGCGu -5' |
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24438 | 3' | -53.5 | NC_005264.1 | + | 90839 | 0.71 | 0.805592 |
Target: 5'- cGCACGUCGagcaagaaacaGCUCGCguaGGAUCGCGa -3' miRNA: 3'- -CGUGCAGUg----------CGAGUGagcUCUAGCGU- -5' |
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24438 | 3' | -53.5 | NC_005264.1 | + | 43639 | 0.72 | 0.778171 |
Target: 5'- cGCGCGUUACGCUCGCUuCGccAGG-CGUu -3' miRNA: 3'- -CGUGCAGUGCGAGUGA-GC--UCUaGCGu -5' |
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24438 | 3' | -53.5 | NC_005264.1 | + | 3288 | 0.72 | 0.749559 |
Target: 5'- aGCGCcagaGUCGugaGCUCGCgCGGGAUCGCGc -3' miRNA: 3'- -CGUG----CAGUg--CGAGUGaGCUCUAGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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