miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24438 3' -53.5 NC_005264.1 + 3288 0.72 0.749559
Target:  5'- aGCGCcagaGUCGugaGCUCGCgCGGGAUCGCGc -3'
miRNA:   3'- -CGUG----CAGUg--CGAGUGaGCUCUAGCGU- -5'
24438 3' -53.5 NC_005264.1 + 4549 0.7 0.871134
Target:  5'- -gGCGUCGCGC-CAaguCUCGGGAUCaCAa -3'
miRNA:   3'- cgUGCAGUGCGaGU---GAGCUCUAGcGU- -5'
24438 3' -53.5 NC_005264.1 + 5366 0.69 0.911415
Target:  5'- uCGCGUCGCGCUCuuuACcCGAGuagcCGCGu -3'
miRNA:   3'- cGUGCAGUGCGAG---UGaGCUCua--GCGU- -5'
24438 3' -53.5 NC_005264.1 + 8892 0.66 0.977485
Target:  5'- uGUACGUacaACGUgUCGCUgGAGAcgCGCGu -3'
miRNA:   3'- -CGUGCAg--UGCG-AGUGAgCUCUa-GCGU- -5'
24438 3' -53.5 NC_005264.1 + 16393 0.69 0.892312
Target:  5'- uGCcCGUgGCGCauuggCACUCGGGGagGCAa -3'
miRNA:   3'- -CGuGCAgUGCGa----GUGAGCUCUagCGU- -5'
24438 3' -53.5 NC_005264.1 + 25857 0.68 0.933531
Target:  5'- -aGCGUCuCGCUUACcgCGAGA-CGCu -3'
miRNA:   3'- cgUGCAGuGCGAGUGa-GCUCUaGCGu -5'
24438 3' -53.5 NC_005264.1 + 29765 0.67 0.947586
Target:  5'- cGCAC--CACaGCUCGCUCGcGGcUCGCAc -3'
miRNA:   3'- -CGUGcaGUG-CGAGUGAGCuCU-AGCGU- -5'
24438 3' -53.5 NC_005264.1 + 30382 0.68 0.917306
Target:  5'- cCGCGUCGCGuCUCGgCggCGGcGGUCGCGc -3'
miRNA:   3'- cGUGCAGUGC-GAGU-Ga-GCU-CUAGCGU- -5'
24438 3' -53.5 NC_005264.1 + 30552 0.67 0.955772
Target:  5'- --gUGUCGCGaUCACUucuaccggCGGGGUCGCAg -3'
miRNA:   3'- cguGCAGUGCgAGUGA--------GCUCUAGCGU- -5'
24438 3' -53.5 NC_005264.1 + 31583 0.71 0.839889
Target:  5'- cGCGCaGUUACgGCgggCACUuuugaCGAGAUCGCGa -3'
miRNA:   3'- -CGUG-CAGUG-CGa--GUGA-----GCUCUAGCGU- -5'
24438 3' -53.5 NC_005264.1 + 31753 0.67 0.947586
Target:  5'- gGCGCcUUugGCUCGCacCGGGAugguUCGCGg -3'
miRNA:   3'- -CGUGcAGugCGAGUGa-GCUCU----AGCGU- -5'
24438 3' -53.5 NC_005264.1 + 33212 0.66 0.977245
Target:  5'- gGCugGcgGCGCUCggcgucuACUCGAGAagcuUCGCc -3'
miRNA:   3'- -CGugCagUGCGAG-------UGAGCUCU----AGCGu -5'
24438 3' -53.5 NC_005264.1 + 36146 0.67 0.963043
Target:  5'- cCACGUaGCGCUgugcgaGCUCGGGAagCGCGa -3'
miRNA:   3'- cGUGCAgUGCGAg-----UGAGCUCUa-GCGU- -5'
24438 3' -53.5 NC_005264.1 + 40037 0.66 0.966026
Target:  5'- uGUGCgGUgGCGCUaaCACucugguuUCGAGGUCGCGg -3'
miRNA:   3'- -CGUG-CAgUGCGA--GUG-------AGCUCUAGCGU- -5'
24438 3' -53.5 NC_005264.1 + 42484 0.67 0.95952
Target:  5'- uGCGUGUCccCGCUCGCUggguuuaGGGAUCGCc -3'
miRNA:   3'- -CGUGCAGu-GCGAGUGAg------CUCUAGCGu -5'
24438 3' -53.5 NC_005264.1 + 43476 0.73 0.729946
Target:  5'- cGCGCG-CAgaGCUCGCuugacaagaaccUCGGGGUCGCAg -3'
miRNA:   3'- -CGUGCaGUg-CGAGUG------------AGCUCUAGCGU- -5'
24438 3' -53.5 NC_005264.1 + 43639 0.72 0.778171
Target:  5'- cGCGCGUUACGCUCGCUuCGccAGG-CGUu -3'
miRNA:   3'- -CGUGCAGUGCGAGUGA-GC--UCUaGCGu -5'
24438 3' -53.5 NC_005264.1 + 44269 0.74 0.689766
Target:  5'- gGCGCGUCACGCcgCGCggaUGAGAUCa-- -3'
miRNA:   3'- -CGUGCAGUGCGa-GUGa--GCUCUAGcgu -5'
24438 3' -53.5 NC_005264.1 + 49781 0.66 0.966347
Target:  5'- gGCAUGUC-CGuCUCGCguaAGAUCGCc -3'
miRNA:   3'- -CGUGCAGuGC-GAGUGagcUCUAGCGu -5'
24438 3' -53.5 NC_005264.1 + 56237 0.74 0.689766
Target:  5'- -aGCGUCGCGCggcuUUugUCGAGGUgGCGg -3'
miRNA:   3'- cgUGCAGUGCG----AGugAGCUCUAgCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.