miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24438 5' -54.4 NC_005264.1 + 159768 0.66 0.955935
Target:  5'- ----cGGCCGCcgccaguCGcgGCGAGACa -3'
miRNA:   3'- aaacaCCGGCGcuu----GCuaCGCUCUGc -5'
24438 5' -54.4 NC_005264.1 + 95341 0.66 0.955935
Target:  5'- ----gGcGCCGCGaAACGGacucgGCGGGGCGg -3'
miRNA:   3'- aaacaC-CGGCGC-UUGCUa----CGCUCUGC- -5'
24438 5' -54.4 NC_005264.1 + 40742 0.66 0.955935
Target:  5'- ----cGGCCGCcgccaguCGcgGCGAGACa -3'
miRNA:   3'- aaacaCCGGCGcuu----GCuaCGCUCUGc -5'
24438 5' -54.4 NC_005264.1 + 121895 0.66 0.951951
Target:  5'- -cUGcGGCUGCGAucgaccgggGCGcgGCGcGGCGg -3'
miRNA:   3'- aaACaCCGGCGCU---------UGCuaCGCuCUGC- -5'
24438 5' -54.4 NC_005264.1 + 53977 0.66 0.951951
Target:  5'- aUUG-GcGCCG-GAACGGcgGCGAGACu -3'
miRNA:   3'- aAACaC-CGGCgCUUGCUa-CGCUCUGc -5'
24438 5' -54.4 NC_005264.1 + 2869 0.66 0.951951
Target:  5'- -cUGcGGCUGCGAucgaccgggGCGcgGCGcGGCGg -3'
miRNA:   3'- aaACaCCGGCGCU---------UGCuaCGCuCUGC- -5'
24438 5' -54.4 NC_005264.1 + 25154 0.66 0.951951
Target:  5'- ---uUGGCCGUGAGCGAgGaCGuGGCc -3'
miRNA:   3'- aaacACCGGCGCUUGCUaC-GCuCUGc -5'
24438 5' -54.4 NC_005264.1 + 148645 0.66 0.947732
Target:  5'- --cGUGGCCGaugGGGCGAcgGCGAucgccaccgaGGCGa -3'
miRNA:   3'- aaaCACCGGCg--CUUGCUa-CGCU----------CUGC- -5'
24438 5' -54.4 NC_005264.1 + 68610 0.66 0.938577
Target:  5'- -gUGUGGCCGCGuAGCGcAUcguagcaacGCGugguAGGCGa -3'
miRNA:   3'- aaACACCGGCGC-UUGC-UA---------CGC----UCUGC- -5'
24438 5' -54.4 NC_005264.1 + 97399 0.67 0.933636
Target:  5'- ----gGGCC-CGAGCGAUGCGAcguguguucGGCa -3'
miRNA:   3'- aaacaCCGGcGCUUGCUACGCU---------CUGc -5'
24438 5' -54.4 NC_005264.1 + 102787 0.67 0.933636
Target:  5'- --gGUGGCCuguguugcGCGAugcccGCGAUGagaGGGGCGu -3'
miRNA:   3'- aaaCACCGG--------CGCU-----UGCUACg--CUCUGC- -5'
24438 5' -54.4 NC_005264.1 + 24177 0.67 0.930555
Target:  5'- -cUGcGGCCGCGGucgguaaagucuggcGCGGUGCcGGugGc -3'
miRNA:   3'- aaACaCCGGCGCU---------------UGCUACGcUCugC- -5'
24438 5' -54.4 NC_005264.1 + 123522 0.67 0.928452
Target:  5'- ----gGGUCGCGAGCGGagGgGGGACu -3'
miRNA:   3'- aaacaCCGGCGCUUGCUa-CgCUCUGc -5'
24438 5' -54.4 NC_005264.1 + 4495 0.67 0.928452
Target:  5'- ----gGGUCGCGAGCGGagGgGGGACu -3'
miRNA:   3'- aaacaCCGGCGCUUGCUa-CgCUCUGc -5'
24438 5' -54.4 NC_005264.1 + 157685 0.67 0.917351
Target:  5'- ----aGGCUuCGGACGAUGCGGcGCGg -3'
miRNA:   3'- aaacaCCGGcGCUUGCUACGCUcUGC- -5'
24438 5' -54.4 NC_005264.1 + 101858 0.67 0.917351
Target:  5'- ----aGGCCGCGAuaguCGgcGCcGAGACa -3'
miRNA:   3'- aaacaCCGGCGCUu---GCuaCG-CUCUGc -5'
24438 5' -54.4 NC_005264.1 + 77495 0.67 0.917351
Target:  5'- --aGUcGCUGCGAGCGAUcaugggguucGCGAcGACGa -3'
miRNA:   3'- aaaCAcCGGCGCUUGCUA----------CGCU-CUGC- -5'
24438 5' -54.4 NC_005264.1 + 154784 0.68 0.905279
Target:  5'- -cUGcGGCCGCGacGugGGUGaaGAGGCGg -3'
miRNA:   3'- aaACaCCGGCGC--UugCUACg-CUCUGC- -5'
24438 5' -54.4 NC_005264.1 + 35758 0.68 0.905279
Target:  5'- -cUGcGGCCGCGacGugGGUGaaGAGGCGg -3'
miRNA:   3'- aaACaCCGGCGC--UugCUACg-CUCUGC- -5'
24438 5' -54.4 NC_005264.1 + 159097 0.68 0.898882
Target:  5'- -----cGCCGUGAagccgGCGAUcGCGAGACGu -3'
miRNA:   3'- aaacacCGGCGCU-----UGCUA-CGCUCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.