miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24438 5' -54.4 NC_005264.1 + 2869 0.66 0.951951
Target:  5'- -cUGcGGCUGCGAucgaccgggGCGcgGCGcGGCGg -3'
miRNA:   3'- aaACaCCGGCGCU---------UGCuaCGCuCUGC- -5'
24438 5' -54.4 NC_005264.1 + 4495 0.67 0.928452
Target:  5'- ----gGGUCGCGAGCGGagGgGGGACu -3'
miRNA:   3'- aaacaCCGGCGCUUGCUa-CgCUCUGc -5'
24438 5' -54.4 NC_005264.1 + 6316 0.69 0.853312
Target:  5'- uUUUGuUGaGCCGCGAgcccccguagcuguGCGAUacGCGGGACa -3'
miRNA:   3'- -AAAC-AC-CGGCGCU--------------UGCUA--CGCUCUGc -5'
24438 5' -54.4 NC_005264.1 + 16912 0.78 0.394649
Target:  5'- --cGUcGGCCGCGGACGAUGgCGGcGGCGu -3'
miRNA:   3'- aaaCA-CCGGCGCUUGCUAC-GCU-CUGC- -5'
24438 5' -54.4 NC_005264.1 + 17399 0.68 0.898882
Target:  5'- -aUG-GGCUGCGAAgaGGUGCGGcguGACGu -3'
miRNA:   3'- aaACaCCGGCGCUUg-CUACGCU---CUGC- -5'
24438 5' -54.4 NC_005264.1 + 19434 0.74 0.565116
Target:  5'- -gUGUGGCCGCGG--GgcGCGGGugGg -3'
miRNA:   3'- aaACACCGGCGCUugCuaCGCUCugC- -5'
24438 5' -54.4 NC_005264.1 + 20243 0.68 0.890213
Target:  5'- --cGUGGCCaucgucGCGGccggcauucaggggACGGUGCGAGAa- -3'
miRNA:   3'- aaaCACCGG------CGCU--------------UGCUACGCUCUgc -5'
24438 5' -54.4 NC_005264.1 + 24177 0.67 0.930555
Target:  5'- -cUGcGGCCGCGGucgguaaagucuggcGCGGUGCcGGugGc -3'
miRNA:   3'- aaACaCCGGCGCU---------------UGCUACGcUCugC- -5'
24438 5' -54.4 NC_005264.1 + 25154 0.66 0.951951
Target:  5'- ---uUGGCCGUGAGCGAgGaCGuGGCc -3'
miRNA:   3'- aaacACCGGCGCUUGCUaC-GCuCUGc -5'
24438 5' -54.4 NC_005264.1 + 25595 0.8 0.308162
Target:  5'- ---cUGGCCGcCGGACGAgagcgGCGAGACGa -3'
miRNA:   3'- aaacACCGGC-GCUUGCUa----CGCUCUGC- -5'
24438 5' -54.4 NC_005264.1 + 31178 0.69 0.839563
Target:  5'- ----gGGCCggaggGCGAGCGA-GUGGGACGg -3'
miRNA:   3'- aaacaCCGG-----CGCUUGCUaCGCUCUGC- -5'
24438 5' -54.4 NC_005264.1 + 35758 0.68 0.905279
Target:  5'- -cUGcGGCCGCGacGugGGUGaaGAGGCGg -3'
miRNA:   3'- aaACaCCGGCGC--UugCUACg-CUCUGC- -5'
24438 5' -54.4 NC_005264.1 + 37093 0.72 0.692742
Target:  5'- --aGUGGcCCGCccaagguggugggcaGGACGAggGCGAGGCGg -3'
miRNA:   3'- aaaCACC-GGCG---------------CUUGCUa-CGCUCUGC- -5'
24438 5' -54.4 NC_005264.1 + 38342 0.69 0.847721
Target:  5'- ---cUGGCCGUGAugcuGgGcgGCGGGGCGg -3'
miRNA:   3'- aaacACCGGCGCU----UgCuaCGCUCUGC- -5'
24438 5' -54.4 NC_005264.1 + 40742 0.66 0.955935
Target:  5'- ----cGGCCGCcgccaguCGcgGCGAGACa -3'
miRNA:   3'- aaacaCCGGCGcuu----GCuaCGCUCUGc -5'
24438 5' -54.4 NC_005264.1 + 41790 0.69 0.847721
Target:  5'- -----uGCCGCGAuaGCGAUGCugacuGAGACGa -3'
miRNA:   3'- aaacacCGGCGCU--UGCUACG-----CUCUGC- -5'
24438 5' -54.4 NC_005264.1 + 45179 0.69 0.847721
Target:  5'- ----cGGCaGCGAACGGUcuggcaguaacaGCGAGGCGg -3'
miRNA:   3'- aaacaCCGgCGCUUGCUA------------CGCUCUGC- -5'
24438 5' -54.4 NC_005264.1 + 53071 0.73 0.63717
Target:  5'- --gGUGGCCGCGGACccaGCGGGAg- -3'
miRNA:   3'- aaaCACCGGCGCUUGcuaCGCUCUgc -5'
24438 5' -54.4 NC_005264.1 + 53977 0.66 0.951951
Target:  5'- aUUG-GcGCCG-GAACGGcgGCGAGACu -3'
miRNA:   3'- aAACaC-CGGCgCUUGCUa-CGCUCUGc -5'
24438 5' -54.4 NC_005264.1 + 59988 0.77 0.403253
Target:  5'- --gGUGGCCGCGAGCGAgacggccGCGuGGCc -3'
miRNA:   3'- aaaCACCGGCGCUUGCUa------CGCuCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.