miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24439 5' -58.6 NC_005264.1 + 138494 0.66 0.829451
Target:  5'- aGAGCGGCGGGgauaUGC-CCCGcCGUUc -3'
miRNA:   3'- cCUCGCCGCUCaa--GCGuGGGU-GCGAa -5'
24439 5' -58.6 NC_005264.1 + 30618 0.66 0.829451
Target:  5'- cGGcGGCGGCGA---CGgAUCCGCGCg- -3'
miRNA:   3'- -CC-UCGCCGCUcaaGCgUGGGUGCGaa -5'
24439 5' -58.6 NC_005264.1 + 149645 0.66 0.829451
Target:  5'- cGGcGGCGGCGA---CGgAUCCGCGCg- -3'
miRNA:   3'- -CC-UCGCCGCUcaaGCgUGGGUGCGaa -5'
24439 5' -58.6 NC_005264.1 + 67054 0.66 0.829451
Target:  5'- aGGcGGCGGaagcgccuggaaCGAGUacUCGCACgCCGCGUa- -3'
miRNA:   3'- -CC-UCGCC------------GCUCA--AGCGUG-GGUGCGaa -5'
24439 5' -58.6 NC_005264.1 + 67358 0.66 0.82447
Target:  5'- aGGGCGGaaaacguaGCGCCCGCGCUc -3'
miRNA:   3'- cCUCGCCgcucaag-CGUGGGUGCGAa -5'
24439 5' -58.6 NC_005264.1 + 71683 0.66 0.812613
Target:  5'- uGGAGCGGUuuGGUgaagUGUAuCCUACGCUUu -3'
miRNA:   3'- -CCUCGCCGc-UCAa---GCGU-GGGUGCGAA- -5'
24439 5' -58.6 NC_005264.1 + 23300 0.66 0.812613
Target:  5'- aGGAaaGCcGCGA--UCGUGCCCAUGCUg -3'
miRNA:   3'- -CCU--CGcCGCUcaAGCGUGGGUGCGAa -5'
24439 5' -58.6 NC_005264.1 + 138416 0.66 0.812613
Target:  5'- -uAGCGGCGAGaaCGUGCUuugcguCGCGCUg -3'
miRNA:   3'- ccUCGCCGCUCaaGCGUGG------GUGCGAa -5'
24439 5' -58.6 NC_005264.1 + 82365 0.66 0.812613
Target:  5'- -uGGCGGCGaAGcggagcacUUCGCACaCCAcCGCUg -3'
miRNA:   3'- ccUCGCCGC-UC--------AAGCGUG-GGU-GCGAa -5'
24439 5' -58.6 NC_005264.1 + 158211 0.66 0.803952
Target:  5'- -aAGCGGCccggcgauuuucGAGaaCGCGCCUACGCc- -3'
miRNA:   3'- ccUCGCCG------------CUCaaGCGUGGGUGCGaa -5'
24439 5' -58.6 NC_005264.1 + 82194 0.66 0.803952
Target:  5'- aGAGCGGCcgugUCGUGgCCGCGCg- -3'
miRNA:   3'- cCUCGCCGcucaAGCGUgGGUGCGaa -5'
24439 5' -58.6 NC_005264.1 + 39184 0.66 0.803952
Target:  5'- -aAGCGGCccggcgauuuucGAGaaCGCGCCUACGCc- -3'
miRNA:   3'- ccUCGCCG------------CUCaaGCGUGGGUGCGaa -5'
24439 5' -58.6 NC_005264.1 + 79607 0.66 0.795141
Target:  5'- -cAGCGGCGGccuaGaCGCCCACGCg- -3'
miRNA:   3'- ccUCGCCGCUcaagC-GUGGGUGCGaa -5'
24439 5' -58.6 NC_005264.1 + 7868 0.66 0.786188
Target:  5'- gGGGGCGGCGucggCGC-CCCAgaUGCg- -3'
miRNA:   3'- -CCUCGCCGCucaaGCGuGGGU--GCGaa -5'
24439 5' -58.6 NC_005264.1 + 33260 0.66 0.786188
Target:  5'- -cAGCGGCGAacgCGCgAUCCGCGCc- -3'
miRNA:   3'- ccUCGCCGCUcaaGCG-UGGGUGCGaa -5'
24439 5' -58.6 NC_005264.1 + 81810 0.66 0.786188
Target:  5'- gGGuAGaCGGCGGGUagGCGCCgCugGUUc -3'
miRNA:   3'- -CC-UC-GCCGCUCAagCGUGG-GugCGAa -5'
24439 5' -58.6 NC_005264.1 + 152287 0.66 0.786188
Target:  5'- -cAGCGGCGAacgCGCgAUCCGCGCc- -3'
miRNA:   3'- ccUCGCCGCUcaaGCG-UGGGUGCGaa -5'
24439 5' -58.6 NC_005264.1 + 126894 0.66 0.786188
Target:  5'- gGGGGCGGCGucggCGC-CCCAgaUGCg- -3'
miRNA:   3'- -CCUCGCCGCucaaGCGuGGGU--GCGaa -5'
24439 5' -58.6 NC_005264.1 + 67021 0.67 0.7771
Target:  5'- cGGAGCGGCGGccuugCGCAggccCCCgACGUa- -3'
miRNA:   3'- -CCUCGCCGCUcaa--GCGU----GGG-UGCGaa -5'
24439 5' -58.6 NC_005264.1 + 3332 0.67 0.7771
Target:  5'- cGGAGCGa-GAGUagUCGCGCCaCACGg-- -3'
miRNA:   3'- -CCUCGCcgCUCA--AGCGUGG-GUGCgaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.