miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24440 3' -57.2 NC_005264.1 + 122792 0.66 0.889347
Target:  5'- ---cGGGgCGcuGCGGGCCCUuggucGACCGc -3'
miRNA:   3'- cuaaCCCgGCu-UGCCUGGGA-----CUGGCu -5'
24440 3' -57.2 NC_005264.1 + 3766 0.66 0.889347
Target:  5'- ---cGGGgCGcuGCGGGCCCUuggucGACCGc -3'
miRNA:   3'- cuaaCCCgGCu-UGCCUGGGA-----CUGGCu -5'
24440 3' -57.2 NC_005264.1 + 109115 0.66 0.882576
Target:  5'- ---cGGGCaCGAcgagACGGACUCguucGCCGAg -3'
miRNA:   3'- cuaaCCCG-GCU----UGCCUGGGac--UGGCU- -5'
24440 3' -57.2 NC_005264.1 + 129764 0.66 0.87559
Target:  5'- ---gGGGaaaCGAGCGGcgACCCUGgACCa- -3'
miRNA:   3'- cuaaCCCg--GCUUGCC--UGGGAC-UGGcu -5'
24440 3' -57.2 NC_005264.1 + 10738 0.66 0.87559
Target:  5'- ---gGGGaaaCGAGCGGcgACCCUGgACCa- -3'
miRNA:   3'- cuaaCCCg--GCUUGCC--UGGGAC-UGGcu -5'
24440 3' -57.2 NC_005264.1 + 120579 0.66 0.860992
Target:  5'- ---cGcGCCGGcaauagGCGGGCCCcGGCCGGa -3'
miRNA:   3'- cuaaCcCGGCU------UGCCUGGGaCUGGCU- -5'
24440 3' -57.2 NC_005264.1 + 1552 0.66 0.860992
Target:  5'- ---cGcGCCGGcaauagGCGGGCCCcGGCCGGa -3'
miRNA:   3'- cuaaCcCGGCU------UGCCUGGGaCUGGCU- -5'
24440 3' -57.2 NC_005264.1 + 3002 0.67 0.853391
Target:  5'- cGAcUGGGCCG-GCGGcucgGCUCUGGgguCCGAu -3'
miRNA:   3'- -CUaACCCGGCuUGCC----UGGGACU---GGCU- -5'
24440 3' -57.2 NC_005264.1 + 12685 0.67 0.845596
Target:  5'- ---cGGGuCCGucGCGGACCaCgcccggGACCGGa -3'
miRNA:   3'- cuaaCCC-GGCu-UGCCUGG-Ga-----CUGGCU- -5'
24440 3' -57.2 NC_005264.1 + 135702 0.67 0.837614
Target:  5'- ---cGGGCCGGcccuCGGGCUCaUGGCCc- -3'
miRNA:   3'- cuaaCCCGGCUu---GCCUGGG-ACUGGcu -5'
24440 3' -57.2 NC_005264.1 + 97257 0.67 0.829451
Target:  5'- --aUGuGGCCGc-CGGGCCUUGGCaCGGu -3'
miRNA:   3'- cuaAC-CCGGCuuGCCUGGGACUG-GCU- -5'
24440 3' -57.2 NC_005264.1 + 131712 0.68 0.803952
Target:  5'- ---cGGGuCCGucGCGGACCaCgcccgGACCGGa -3'
miRNA:   3'- cuaaCCC-GGCu-UGCCUGG-Ga----CUGGCU- -5'
24440 3' -57.2 NC_005264.1 + 144274 0.68 0.803952
Target:  5'- -cUUGGGCCG-GCGGAUgCCgcuccGACUGAc -3'
miRNA:   3'- cuAACCCGGCuUGCCUG-GGa----CUGGCU- -5'
24440 3' -57.2 NC_005264.1 + 13363 0.69 0.749121
Target:  5'- ---gGGGCCGAGCcgGGGCCCgcgGcucccCCGAg -3'
miRNA:   3'- cuaaCCCGGCUUG--CCUGGGa--Cu----GGCU- -5'
24440 3' -57.2 NC_005264.1 + 10512 0.69 0.749121
Target:  5'- ---cGGuacucGCCGAGCGGGUCCUGugCGGc -3'
miRNA:   3'- cuaaCC-----CGGCUUGCCUGGGACugGCU- -5'
24440 3' -57.2 NC_005264.1 + 132390 0.69 0.749121
Target:  5'- ---gGGGCCGAGCcgGGGCCCgcgGcucccCCGAg -3'
miRNA:   3'- cuaaCCCGGCUUG--CCUGGGa--Cu----GGCU- -5'
24440 3' -57.2 NC_005264.1 + 129539 0.69 0.749121
Target:  5'- ---cGGuacucGCCGAGCGGGUCCUGugCGGc -3'
miRNA:   3'- cuaaCC-----CGGCUUGCCUGGGACugGCU- -5'
24440 3' -57.2 NC_005264.1 + 82089 0.69 0.739585
Target:  5'- ---gGGGUCGAGCGuucccGCCUUGGCCGu -3'
miRNA:   3'- cuaaCCCGGCUUGCc----UGGGACUGGCu -5'
24440 3' -57.2 NC_005264.1 + 136798 0.69 0.720248
Target:  5'- ---cGuGGCCGGGCGGACaaagCUGGCgGAc -3'
miRNA:   3'- cuaaC-CCGGCUUGCCUGg---GACUGgCU- -5'
24440 3' -57.2 NC_005264.1 + 93848 0.69 0.710466
Target:  5'- ---aGGGCC--GCGGGCCaCUGGCCc- -3'
miRNA:   3'- cuaaCCCGGcuUGCCUGG-GACUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.